Click here to switch to the map view.

The map label for this gene is glnP

Identifier: 15618116

GI number: 15618116

Start: 231981

End: 232634

Strand: Reverse

Name: glnP

Synonym: CPn0192

Alternate gene names: 15618116

Gene position: 232634-231981 (Counterclockwise)

Preceding gene: 15618117

Following gene: 15618115

Centisome position: 18.91

GC content: 35.47

Gene sequence:

>654_bases
GTGGATCATTGGCTAGCTATAGCAAGACTGTTGTTAAGAGGATGCGGATACACCTTATGTGTGAGCGGAATCGGCATTCT
ATGTGGTTCTATTTTAGGTCTTTTGATTGGAACGGTGACTTCTCTATACTTCCCTTCTAAGTTAACGAAACTTTTAGCTA
ATAGTTATGTGACTGTTATCCGCGGGACTCCTTTATTTATTCAAATTTTGATTATATATTTTGGATTGCCTGAAGTTCTC
CCCATAGAACCCACACCTCTAGTTGCTGGAATTATTGCTTTAAGTATGAATTCTGCAGCATATCTTGCAGAAAATATCCG
TGGAGGTATCAATTCTCTTTCTATAGGGCAGTGGGAATCCGCAATGGTTTTGGGATATAAGAAGTATCAAATTTTCGTTT
ATATTATTTATCCTCAAGTTTTTAAAAATATTTTACCATCCTTAACCAATGAATTTGTTTCTTTGATCAAGGAAAGTAGT
ATTTTAATGGTTGTCGGTGTCCCTGAGTTAACTAAAGTAACTAAGGATATTGTCTCGAGAGAGTTGAACCCTATGGAAAT
GTATCTTATTTGTGCTGGGCTATATTTCTTAATGACAACATCATTTTCCTGTATTTCTAGGTTATCAGAAAAGAGAAGGA
GTTATGACAATTAG

Upstream 100 bases:

>100_bases
CCCATTGTTGATGGTTTCGATTGCAAATTTACTGCAAGTTTTCTTGGATTAATTGCATAAATATGATTTCATTATAAATA
AATATGCATAAGAGGTCGGA

Downstream 100 bases:

>100_bases
AGTCCGAAACCTTGCCTACTCTGTAAATAAGAAAAAGATTCTAGATGGTGTAACTTTTTCTTTAGAGCGAGGGCACATTA
CACTGTTTGTTGGGAAGAGT

Product: amino acid ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MDHWLAIARLLLRGCGYTLCVSGIGILCGSILGLLIGTVTSLYFPSKLTKLLANSYVTVIRGTPLFIQILIIYFGLPEVL
PIEPTPLVAGIIALSMNSAAYLAENIRGGINSLSIGQWESAMVLGYKKYQIFVYIIYPQVFKNILPSLTNEFVSLIKESS
ILMVVGVPELTKVTKDIVSRELNPMEMYLICAGLYFLMTTSFSCISRLSEKRRSYDN

Sequences:

>Translated_217_residues
MDHWLAIARLLLRGCGYTLCVSGIGILCGSILGLLIGTVTSLYFPSKLTKLLANSYVTVIRGTPLFIQILIIYFGLPEVL
PIEPTPLVAGIIALSMNSAAYLAENIRGGINSLSIGQWESAMVLGYKKYQIFVYIIYPQVFKNILPSLTNEFVSLIKESS
ILMVVGVPELTKVTKDIVSRELNPMEMYLICAGLYFLMTTSFSCISRLSEKRRSYDN
>Mature_217_residues
MDHWLAIARLLLRGCGYTLCVSGIGILCGSILGLLIGTVTSLYFPSKLTKLLANSYVTVIRGTPLFIQILIIYFGLPEVL
PIEPTPLVAGIIALSMNSAAYLAENIRGGINSLSIGQWESAMVLGYKKYQIFVYIIYPQVFKNILPSLTNEFVSLIKESS
ILMVVGVPELTKVTKDIVSRELNPMEMYLICAGLYFLMTTSFSCISRLSEKRRSYDN

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=38.5365853658537, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787087, Length=198, Percent_Identity=28.7878787878788, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788646, Length=179, Percent_Identity=27.3743016759777, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=29.1079812206573, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787086, Length=203, Percent_Identity=29.5566502463054, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786874, Length=207, Percent_Identity=25.6038647342995, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994930, Length=127, Percent_Identity=26.7716535433071, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24049; Mature: 24049

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHWLAIARLLLRGCGYTLCVSGIGILCGSILGLLIGTVTSLYFPSKLTKLLANSYVTVI
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGTPLFIQILIIYFGLPEVLPIEPTPLVAGIIALSMNSAAYLAENIRGGINSLSIGQWES
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCH
AMVLGYKKYQIFVYIIYPQVFKNILPSLTNEFVSLIKESSILMVVGVPELTKVTKDIVSR
HHHEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHC
ELNPMEMYLICAGLYFLMTTSFSCISRLSEKRRSYDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDHWLAIARLLLRGCGYTLCVSGIGILCGSILGLLIGTVTSLYFPSKLTKLLANSYVTVI
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGTPLFIQILIIYFGLPEVLPIEPTPLVAGIIALSMNSAAYLAENIRGGINSLSIGQWES
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCH
AMVLGYKKYQIFVYIIYPQVFKNILPSLTNEFVSLIKESSILMVVGVPELTKVTKDIVSR
HHHEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHC
ELNPMEMYLICAGLYFLMTTSFSCISRLSEKRRSYDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]