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The map label for this gene is rfaC1 [C]

Identifier: 15606683

GI number: 15606683

Start: 1092737

End: 1093675

Strand: Direct

Name: rfaC1 [C]

Synonym: aq_1543

Alternate gene names: 15606683

Gene position: 1092737-1093675 (Clockwise)

Preceding gene: 15606682

Following gene: 15606684

Centisome position: 70.44

GC content: 41.32

Gene sequence:

>939_bases
ATGAAGAAGGCGTTAATAGTGAGGCTTTCCTCCTTAGGAGACGTAGTTTTAACGTCTGTGGTATTTGACCCTTTGTTAAA
GGCAGGTTATAAACCCTACCTTCTTACATTTAAGCCCTACGATGAAGTATTTCAGGATGACGACAGAGTAGAGGTAATAC
CCGTAAGTAAAGAAAACTTTTTTAAAGAAATTGAAAAAATCCCGAAGGACTTTGACCTGAAGGTGGATCTCCACGGAAAC
TTAAAGACCTTCTTCCTCAGACTCTTCCTCGGAGGAAAGTGGAGGAAGTATAAAAAAGAAAGCATAAGGAGGAGACTTTC
CGTTTACTTTAAACACTTCAGAAAACCCTTTTTCGTCCCCGAGGCTTACGTGAAGAGCTTACAAGGGATAATTGAGGTAA
AAAATCCGAGACCCTTTATAAAAGTTTCCGAAGAAAGGATAAGAGAATTTAAGGATTTATACGGAAAATACGTGGTTATA
GCCCCGGGAGCGAGGTACAAAAAGAAACGTTATCCTTACTTCAAAGAACTTTCTGAACTCTTCATAAAAGAAGGGATAAA
CGTAGTTATAGTGGGAGACGAAAAGGATCGGGAAATCAGCAAGGATTTTCCGGGCGTAAACCTGTGCGGAAAGCTTTCTT
TGATAGATGTTCTTGGAGTAATTGGAGGAGCGGAACTCTTTGTGGGAAACGACAGCGGACTCCTTCACTGTGCTAGGGCG
GTAAAGACAAAGGCTATTCAGATTTACGGAGGGACTCACCCTACTCTGGGCTTTTCCCTTTACCCCGATGAGGGGAAGGT
TGTCTGCAAGTGTCTTGATTGCCAGCCGTGTGATGTGCACGGTAAAGGAGTGTGTAAAATAGGGAATTACGAATGTCTTA
ATATTCCTCCTATAAAAATTTTTGAGTATGCTATAAACATTTTGAATACCAAGCCGTAA

Upstream 100 bases:

>100_bases
TTGTTATTTCTCTTATATGTGCAGTTCTTGAAAGTCTCCCTCTCAAACTCGACGACAACTTTTACATTCCCGTCTTGGCG
AGCTTTCTCGGAGAGGTGTT

Downstream 100 bases:

>100_bases
AATTAGGAAGAAATTTATAAATAAAAGGAGGTGGGAGACATGGGAATTCTGGAAACACTTGTTTTAAAAGAAAAAATAAA
CGGAACGGAGAAGGCGGTAA

Product: ADP-heptose:LPS heptosyltransferase

Products: NA

Alternate protein names: ADP-HeptoseLPS Heptosyltransferase II; ADP-HeptoseLPS Heptosyltransferase; ADP-Heptose-LPS Heptosyltransferase II; Lipopolysaccharide Core Biosynthesis Protein Rfaq; Heptosyltransferase; Heptosyltransferase Family Protein; ADP-Heptose-LPS Heptosyltransferase; Glycosyl Transferase Family Protein; Lipopolysaccharide Heptosyltransferase I; Glycosyltransferase Family 9 Protein; Lipopolysaccharide Core Biosynthesis Protein RfaQ; LPS Heptosyltransferase II; Heptosyltransferase II; ADP-Heptosyltransferase; Family 9 Glycosyl Transferase

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKKALIVRLSSLGDVVLTSVVFDPLLKAGYKPYLLTFKPYDEVFQDDDRVEVIPVSKENFFKEIEKIPKDFDLKVDLHGN
LKTFFLRLFLGGKWRKYKKESIRRRLSVYFKHFRKPFFVPEAYVKSLQGIIEVKNPRPFIKVSEERIREFKDLYGKYVVI
APGARYKKKRYPYFKELSELFIKEGINVVIVGDEKDREISKDFPGVNLCGKLSLIDVLGVIGGAELFVGNDSGLLHCARA
VKTKAIQIYGGTHPTLGFSLYPDEGKVVCKCLDCQPCDVHGKGVCKIGNYECLNIPPIKIFEYAINILNTKP

Sequences:

>Translated_312_residues
MKKALIVRLSSLGDVVLTSVVFDPLLKAGYKPYLLTFKPYDEVFQDDDRVEVIPVSKENFFKEIEKIPKDFDLKVDLHGN
LKTFFLRLFLGGKWRKYKKESIRRRLSVYFKHFRKPFFVPEAYVKSLQGIIEVKNPRPFIKVSEERIREFKDLYGKYVVI
APGARYKKKRYPYFKELSELFIKEGINVVIVGDEKDREISKDFPGVNLCGKLSLIDVLGVIGGAELFVGNDSGLLHCARA
VKTKAIQIYGGTHPTLGFSLYPDEGKVVCKCLDCQPCDVHGKGVCKIGNYECLNIPPIKIFEYAINILNTKP
>Mature_312_residues
MKKALIVRLSSLGDVVLTSVVFDPLLKAGYKPYLLTFKPYDEVFQDDDRVEVIPVSKENFFKEIEKIPKDFDLKVDLHGN
LKTFFLRLFLGGKWRKYKKESIRRRLSVYFKHFRKPFFVPEAYVKSLQGIIEVKNPRPFIKVSEERIREFKDLYGKYVVI
APGARYKKKRYPYFKELSELFIKEGINVVIVGDEKDREISKDFPGVNLCGKLSLIDVLGVIGGAELFVGNDSGLLHCARA
VKTKAIQIYGGTHPTLGFSLYPDEGKVVCKCLDCQPCDVHGKGVCKIGNYECLNIPPIKIFEYAINILNTKP

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35672; Mature: 35672

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKALIVRLSSLGDVVLTSVVFDPLLKAGYKPYLLTFKPYDEVFQDDDRVEVIPVSKENF
CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCEEEEECCHHHH
FKEIEKIPKDFDLKVDLHGNLKTFFLRLFLGGKWRKYKKESIRRRLSVYFKHFRKPFFVP
HHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
EAYVKSLQGIIEVKNPRPFIKVSEERIREFKDLYGKYVVIAPGARYKKKRYPYFKELSEL
HHHHHHHHHHEEECCCCCCEEECHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHHHHHH
FIKEGINVVIVGDEKDREISKDFPGVNLCGKLSLIDVLGVIGGAELFVGNDSGLLHCARA
HHHCCCEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
VKTKAIQIYGGTHPTLGFSLYPDEGKVVCKCLDCQPCDVHGKGVCKIGNYECLNIPPIKI
HHHEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEEECCEEEECCCCHHH
FEYAINILNTKP
HHHHHHHHCCCC
>Mature Secondary Structure
MKKALIVRLSSLGDVVLTSVVFDPLLKAGYKPYLLTFKPYDEVFQDDDRVEVIPVSKENF
CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCEEEEECCHHHH
FKEIEKIPKDFDLKVDLHGNLKTFFLRLFLGGKWRKYKKESIRRRLSVYFKHFRKPFFVP
HHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
EAYVKSLQGIIEVKNPRPFIKVSEERIREFKDLYGKYVVIAPGARYKKKRYPYFKELSEL
HHHHHHHHHHEEECCCCCCEEECHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHHHHHH
FIKEGINVVIVGDEKDREISKDFPGVNLCGKLSLIDVLGVIGGAELFVGNDSGLLHCARA
HHHCCCEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
VKTKAIQIYGGTHPTLGFSLYPDEGKVVCKCLDCQPCDVHGKGVCKIGNYECLNIPPIKI
HHHEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEEECCEEEECCCCHHH
FEYAINILNTKP
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA