| Definition | Aquifex aeolicus VF5, complete genome. |
|---|---|
| Accession | NC_000918 |
| Length | 1,551,335 |
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The map label for this gene is omp [H]
Identifier: 15606510
GI number: 15606510
Start: 920473
End: 922809
Strand: Direct
Name: omp [H]
Synonym: aq_1300
Alternate gene names: 15606510
Gene position: 920473-922809 (Clockwise)
Preceding gene: 15606509
Following gene: 15606514
Centisome position: 59.33
GC content: 41.93
Gene sequence:
>2337_bases GTGAAAAAGGAATTTTTAACCCTAGCCCTTTTTTTAGGTGTAGCTAACGCCGCAGAAATAGAAAAGATAATAATTAAAGG GAATAAGTACATTCCCGATGAATTAATAAGGGGACTTTTAAGCGTAAGAAAGGGTTCAGAGTTTTCCCTTGAAAGGATAA GAAAAGACATAAGGAAACTTTACAGAACTGGACTCTTTACAAAGGTAGAAGCTTACGAAGAAGATCAAAATAAAAACGGA AAACCTGAAGTAATACTGGTGGTTGAAGACCTTCCCGTAATTTACAAAATAGAGTTTGAGGGGAATGAGGAGTTCTCTGA CGACGACCTGAAGGAGTACCTCGGTATAGAGACGGAGCTCGGGGAAGTAGAAGTGGAAGAAACCATAGAAGGATACACTT CCAGCCCTGCAATAGAAGAAAGACTTGCCGTAATGAAACAATTAAAACTCGGTCGTATACTTACCTTTCAGGAAATAGAG AGTTTAAGAAGGAGAATTGAAGAGGTATACAAGAGGCACGGCTTTGTAGGGACGAAAGTTGAGTACAAGCTCATCCCGAA AAAAGGAGCTTCAAAACTCGTTTTTGTCATACATGAAGGTAAAAAGATTTACACCTCCGATATAGAGATAGAAGGAAATA AACACTTCAGCGACCGGAAGTTAAAAGGTCTAATGGAATTAAAAGAGCCAAACATTTTCCTCTTTAGACTGCACCCGGCT TTTAGTGAAGAAACGCTAAAAGAAGATGTAAAAAAGATAGAGGAGTTTTATAAAAATGAGGGTTTTTTAGAAGTTGAAGT ATCTTACGAAGTTAAAGAAGAAGGACCAGCACGTAAGGTAATCGTAAAAGTAAAGGAAGGTCCGAGGTACAAACTGAAAG AGATAAAGATAGAGGGAAACACTCTCTTCGCTTACAGCGAACTAGTTGATAACATCCTGAAAAAGAACGAGAGAAAAGGC AGGTATTTCAGAAGGGAGGTTATTGAGAAGATTAAAAACAGGATAAGGGAGAAGTATGCGGAAATAGGATTTTTAAACAC AAGCGTGGAAGAAAGGGTAAATGTAAATCCTGAAAAGAAAGAAGTTTCAGTTCTACTAAAGATAATAGAAGGAAAACCAG TGTACGTAAAGAAGATAAAGATTAAGGGGAATTACGAGACGAGAGATTACGTGATAAGGAGGGAAATGAGAGTTCAGGAA AACGAACTTGCCCTTAAAAAGGGTATAGAGCGTTCGAAAACACGGATAATGAACTTAGGTTACTACGAAGATGTACAGAT AGAGCCCGTTCCGAGAAGGGACGCATGGTGGGATCTTCTCGTTAAGATAAGGGAGAGGTTCACAGGTCAGTTCTCTGTGG GACTTTCTTACAACGAAGTTACGGGACTCGCAGGGTTTATTGAACTCAGGAAGGGTAATTTCAGGGGTACGGGGGACATA GCCGGGATAAGCGTAAGCTACGGTTCCCTGTACAGGAACAACGCTATCTCCTACACGAGAAAGTGGTTCCTTAAAAAACC TGTGGATTTAGACCTTTCGGCTTTCGACAGGAGGATAGAGTACGACACTTACACTGTTGAGAGAACTGGTTTTTCAGTAG CGCTTTCCAAAGAGCTGAGTGAGTACTGGAGGGCGTCTATAGGAACTTCGATCCAAAGGGTAAAGTACAGCGATATAGAC CCTGAGGCGAGCACTTATGTTAAAGAGCAGGCAGGAAGAAGGGACTCGAGAAAGATATTCTTTACCCTCACAAGGGATAC CAGAGATTACTACCTCCTGCCCACAAAAGGTTCACTTTTTGTGTTTAGAAATAGCGTTGGGGTAGGACTCCTCGGCGGTG ATGAGAAGTTTTACAAGTTCGAAGTTGAGGGAGCAAAGTACTTCAGTGATACTTACTTTGACACGGGAATTATACTCAGT CTGAAGGGTGAAGTTGGATTTGTAGAAGGATACGGCGGTAAAAAGGTTCCCATAGACGAGCGCTTCTTCGTAGGGGGAGA CTTTTCCATCAGGGGTTACGAATACGGATACGCGGGACCGGTGGATCCAAACACTTTAGATCCCATAGGTGCTAAAAAGA AGGTGATTACGAGTTTAGAACTCATGTACCCGGTCTTTAAGAAAATGCTTTACTTCGCGGGATTTTTCGATTACGGACTG GGTGCGGATAAGTGGAGTGACTTTAAGCTTTCAAACTTCAGGGGTGGCTACGGTATAGGCGTGAGGATAATAACTCCCTT TGCTCCTATAAGGATAGACTGGGCATTCAAGACAAAAACCGTACCGGGTGATACGAACCGCTCAAGGATACACTTCGTTC TCGGAACCTTCTTCTGA
Upstream 100 bases:
>100_bases GACAAGCCCTACCTCAAACCCGTAAAGAAGAAGGAAAAAGTAGAAGCCCTTCTCGAAAAGTAAGCCCCTTTTTCCTTCTT TCCTTTATAATACTTTCCTT
Downstream 100 bases:
>100_bases TAAAAGTAAAAAAGAGAAGGGCGAATTACTCGCCCAAAACTCTTACGTTTTTAGCCCTTGGACCTTTTGTGTCTTCAACT ACGTCAAACTCTACTTTTTG
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 778; Mature: 778
Protein sequence:
>778_residues MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKLYRTGLFTKVEAYEEDQNKNG KPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETELGEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIE SLRRRIEEVYKRHGFVGTKVEYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGNTLFAYSELVDNILKKNERKG RYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKKEVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQE NELALKKGIERSKTRIMNLGYYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELSEYWRASIGTSIQRVKYSDID PEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLFVFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILS LKGEVGFVEGYGGKKVPIDERFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF
Sequences:
>Translated_778_residues MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKLYRTGLFTKVEAYEEDQNKNG KPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETELGEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIE SLRRRIEEVYKRHGFVGTKVEYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGNTLFAYSELVDNILKKNERKG RYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKKEVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQE NELALKKGIERSKTRIMNLGYYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELSEYWRASIGTSIQRVKYSDID PEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLFVFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILS LKGEVGFVEGYGGKKVPIDERFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF >Mature_778_residues MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKLYRTGLFTKVEAYEEDQNKNG KPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETELGEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIE SLRRRIEEVYKRHGFVGTKVEYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGNTLFAYSELVDNILKKNERKG RYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKKEVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQE NELALKKGIERSKTRIMNLGYYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELSEYWRASIGTSIQRVKYSDID PEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLFVFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILS LKGEVGFVEGYGGKKVPIDERFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=796, Percent_Identity=23.2412060301508, Blast_Score=177, Evalue=3e-45, Organism=Escherichia coli, GI1790666, Length=185, Percent_Identity=34.5945945945946, Blast_Score=77, Evalue=6e-15,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 90000; Mature: 90000
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKL CCCHHHHHHHHHHCCCHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH YRTGLFTKVEAYEEDQNKNGKPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETEL HHCCCCEEEEHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCC GEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIESLRRRIEEVYKRHGFVGTKV CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCCCCEE EYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA EEEEECCCCCCEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGN CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECC TLFAYSELVDNILKKNERKGRYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKK EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHCCCCCCHH EVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQENELALKKGIERSKTRIMNLG HHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHEEECC YYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI CCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHCCEEEEEEECCCCCCCCCE AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELS EEEEEECCHHHCCCCHHHHHHHHHCCCCCCCHHHHCCEEECCEEEEEECCCEEEHHHHHH EYWRASIGTSIQRVKYSDIDPEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLF HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCEE VFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILSLKGEVGFVEGYGGKKVPIDE EEECCCCEEEECCCCEEEEEEECCCEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCC RFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL EEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF CCCCCCCCEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKL CCCHHHHHHHHHHCCCHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH YRTGLFTKVEAYEEDQNKNGKPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETEL HHCCCCEEEEHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCC GEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIESLRRRIEEVYKRHGFVGTKV CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCCCCEE EYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA EEEEECCCCCCEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGN CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECC TLFAYSELVDNILKKNERKGRYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKK EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHCCCCCCHH EVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQENELALKKGIERSKTRIMNLG HHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHEEECC YYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI CCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHCCEEEEEEECCCCCCCCCE AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELS EEEEEECCHHHCCCCHHHHHHHHHCCCCCCCHHHHCCEEECCEEEEEECCCEEEHHHHHH EYWRASIGTSIQRVKYSDIDPEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLF HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCEE VFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILSLKGEVGFVEGYGGKKVPIDE EEECCCCEEEECCCCEEEEEEECCCEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCC RFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL EEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF CCCCCCCCEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]