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The map label for this gene is hoxZ [H]

Identifier: 15606079

GI number: 15606079

Start: 453886

End: 454572

Strand: Direct

Name: hoxZ [H]

Synonym: aq_665

Alternate gene names: 15606079

Gene position: 453886-454572 (Clockwise)

Preceding gene: 15606078

Following gene: 15606080

Centisome position: 29.26

GC content: 43.38

Gene sequence:

>687_bases
ATGTTTAAGAGGATTTTTATATTCAGCGCTTCCTTGAGGATATGGCACTGGATAAACTTCCTCACCATAATGGTCTTATT
TTTTACGGGACTCTACATAGGGACGCCTTACTTCACGACCTCTTCGGGATACGAGGCAACCTACGCCTACGATAAGAACA
TAACGATGGGATTTATAAGGTTTCTTCACTTTTCCGCCGGCTACGTCTTACTCTTTTCCTTCCTCTTCAGGATTTTCATA
GCCTTCTTCAGAAAGGGAGACAGACTCTTCATCCCTAAGTTCTGGACGATAGAGTACTGGGAAGGGATAAAGGAAACCTT
AAAAGAATACCTCCTTATAGGCTCCCGCAAACCGATGATAAGGAATCCCTTAGCGAGAACCGCATACTTTTTCGTTTACT
TGATGATTTTCTTCATGATAGCAACGGGCTTCGGGATGTACGGACTTTCTGACCCCGACGGATTCTGGGCTTCCGTCTTT
GGCTGGGTTGTCTGGAGTCTGGGAGGAGAGTTTGAAGCCCACTACTGGCACCATATAGTTGCATGGCTGATAATACTCTT
CTTTATAGTTCACGTTTACTTCGTATCTAGGGAAGACTTCGTCCACAAAAACGGAGAAGTTTCTTCTATGTTCAACGGCT
CTAAGTTCTTCAAAAAAGACCCTGTTGACCTTAAAGATATAAAGTAA

Upstream 100 bases:

>100_bases
AGAGGTATTCACTCATTTGACCCGTGCCTTGCATGTTCAACGCACCTCTACAACGAAAAGGGAGAAGAGATAGCCAGCGT
AAGGGTTCAGGGGGTGGTTC

Downstream 100 bases:

>100_bases
GGAGGTAAAAAAATGAGGAAGTTTTTACCTTTTGTGGGGCTCGCTTCTTTTGCCTTTGCACACCCGGGACACTTTCACGG
CGTAAACCCTTTTAACTCCG

Product: Ni/Fe hydrogenase B-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MFKRIFIFSASLRIWHWINFLTIMVLFFTGLYIGTPYFTTSSGYEATYAYDKNITMGFIRFLHFSAGYVLLFSFLFRIFI
AFFRKGDRLFIPKFWTIEYWEGIKETLKEYLLIGSRKPMIRNPLARTAYFFVYLMIFFMIATGFGMYGLSDPDGFWASVF
GWVVWSLGGEFEAHYWHHIVAWLIILFFIVHVYFVSREDFVHKNGEVSSMFNGSKFFKKDPVDLKDIK

Sequences:

>Translated_228_residues
MFKRIFIFSASLRIWHWINFLTIMVLFFTGLYIGTPYFTTSSGYEATYAYDKNITMGFIRFLHFSAGYVLLFSFLFRIFI
AFFRKGDRLFIPKFWTIEYWEGIKETLKEYLLIGSRKPMIRNPLARTAYFFVYLMIFFMIATGFGMYGLSDPDGFWASVF
GWVVWSLGGEFEAHYWHHIVAWLIILFFIVHVYFVSREDFVHKNGEVSSMFNGSKFFKKDPVDLKDIK
>Mature_228_residues
MFKRIFIFSASLRIWHWINFLTIMVLFFTGLYIGTPYFTTSSGYEATYAYDKNITMGFIRFLHFSAGYVLLFSFLFRIFI
AFFRKGDRLFIPKFWTIEYWEGIKETLKEYLLIGSRKPMIRNPLARTAYFFVYLMIFFMIATGFGMYGLSDPDGFWASVF
GWVVWSLGGEFEAHYWHHIVAWLIILFFIVHVYFVSREDFVHKNGEVSSMFNGSKFFKKDPVDLKDIK

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=229, Percent_Identity=37.117903930131, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 27157; Mature: 27157

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRIFIFSASLRIWHWINFLTIMVLFFTGLYIGTPYFTTSSGYEATYAYDKNITMGFIR
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCHHHHHH
FLHFSAGYVLLFSFLFRIFIAFFRKGDRLFIPKFWTIEYWEGIKETLKEYLLIGSRKPMI
HHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEHHHHHHHHHHHHHHHHHHCCCCCHH
RNPLARTAYFFVYLMIFFMIATGFGMYGLSDPDGFWASVFGWVVWSLGGEFEAHYWHHIV
HCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
AWLIILFFIVHVYFVSREDFVHKNGEVSSMFNGSKFFKKDPVDLKDIK
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCCCCCCCCCCC
>Mature Secondary Structure
MFKRIFIFSASLRIWHWINFLTIMVLFFTGLYIGTPYFTTSSGYEATYAYDKNITMGFIR
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCHHHHHH
FLHFSAGYVLLFSFLFRIFIAFFRKGDRLFIPKFWTIEYWEGIKETLKEYLLIGSRKPMI
HHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEHHHHHHHHHHHHHHHHHHCCCCCHH
RNPLARTAYFFVYLMIFFMIATGFGMYGLSDPDGFWASVFGWVVWSLGGEFEAHYWHHIV
HCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
AWLIILFFIVHVYFVSREDFVHKNGEVSSMFNGSKFFKKDPVDLKDIK
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7966281 [H]