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The map label for this gene is cph2 [H]

Identifier: 15605855

GI number: 15605855

Start: 222065

End: 222556

Strand: Direct

Name: cph2 [H]

Synonym: aq_341

Alternate gene names: 15605855

Gene position: 222065-222556 (Clockwise)

Preceding gene: 15605854

Following gene: 15605856

Centisome position: 14.31

GC content: 38.21

Gene sequence:

>492_bases
GTGGAAAAAAAACCCATAAGCGTGAACGTAACCGCAAGGACGTTTAAAAATGAAAACTTCCCGAACGAGTTATTTAAATA
TGCAAAAGACATTCCTGCACCCCTGATTCTGGAAATAACGGAAAGGATTTACATGGACGATGTAGAAACCTCAAGAAAGA
TTATAAAAAGGTTAAAAGAGAACAAAAATGTAAAAATAGCGATAGACGACTTCGGAACAGGTTACTCGTCCCTTTCTTAC
CTGAAGGACATAGATACGGACATCCTGAAAATAGATATGTCTTTTGTAAGAAGAATTGTGGAAGACGAAAAAATAAGGGC
GATAGTAAAGGCAATAATAACCCTTGCGAAAGACCTCAACCTCTCAACTCTGGCGGAAGGAGTTGAAACGAAAGAACAGT
ACGAAATCCTTAAAAGTATGGGAGTTGATTTAGTTCAGGGATTTTACTTCTCAAAACCCCTGCCTGAAAACGAAGCCCAG
CTTTTGATATAA

Upstream 100 bases:

>100_bases
TACATTACCCGAATGAGTTTATAAACTTTCTGGAAAATTCCCATTACCTTGATTACTTCAGGGAATGGGCTTTAAAGGAA
GTGACGGATAAAATAAAAAA

Downstream 100 bases:

>100_bases
GCTAATTTCTATGAGTAAAGAAAAGTACTCCTTTGAAGACCTCATAAAGGTTATGGAAGAGTTAAGGAAGAAGTGTCCGT
GGGACAGGGAGCAGACCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MEKKPISVNVTARTFKNENFPNELFKYAKDIPAPLILEITERIYMDDVETSRKIIKRLKENKNVKIAIDDFGTGYSSLSY
LKDIDTDILKIDMSFVRRIVEDEKIRAIVKAIITLAKDLNLSTLAEGVETKEQYEILKSMGVDLVQGFYFSKPLPENEAQ
LLI

Sequences:

>Translated_163_residues
MEKKPISVNVTARTFKNENFPNELFKYAKDIPAPLILEITERIYMDDVETSRKIIKRLKENKNVKIAIDDFGTGYSSLSY
LKDIDTDILKIDMSFVRRIVEDEKIRAIVKAIITLAKDLNLSTLAEGVETKEQYEILKSMGVDLVQGFYFSKPLPENEAQ
LLI
>Mature_163_residues
MEKKPISVNVTARTFKNENFPNELFKYAKDIPAPLILEITERIYMDDVETSRKIIKRLKENKNVKIAIDDFGTGYSSLSY
LKDIDTDILKIDMSFVRRIVEDEKIRAIVKAIITLAKDLNLSTLAEGVETKEQYEILKSMGVDLVQGFYFSKPLPENEAQ
LLI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=158, Percent_Identity=39.873417721519, Blast_Score=113, Evalue=7e-27,
Organism=Escherichia coli, GI87081743, Length=159, Percent_Identity=40.8805031446541, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI87081980, Length=153, Percent_Identity=41.8300653594771, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI226510982, Length=157, Percent_Identity=40.1273885350318, Blast_Score=104, Evalue=2e-24,
Organism=Escherichia coli, GI1786507, Length=156, Percent_Identity=37.8205128205128, Blast_Score=104, Evalue=2e-24,
Organism=Escherichia coli, GI1788502, Length=151, Percent_Identity=39.0728476821192, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI87081845, Length=152, Percent_Identity=40.1315789473684, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI87082096, Length=152, Percent_Identity=40.1315789473684, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790496, Length=153, Percent_Identity=37.2549019607843, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787541, Length=153, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=9e-22,
Organism=Escherichia coli, GI1788849, Length=159, Percent_Identity=36.4779874213836, Blast_Score=94, Evalue=4e-21,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=30.718954248366, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787055, Length=118, Percent_Identity=33.0508474576271, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 18721; Mature: 18721

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKPISVNVTARTFKNENFPNELFKYAKDIPAPLILEITERIYMDDVETSRKIIKRLKE
CCCCCEEEEEEHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
NKNVKIAIDDFGTGYSSLSYLKDIDTDILKIDMSFVRRIVEDEKIRAIVKAIITLAKDLN
CCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSTLAEGVETKEQYEILKSMGVDLVQGFYFSKPLPENEAQLLI
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MEKKPISVNVTARTFKNENFPNELFKYAKDIPAPLILEITERIYMDDVETSRKIIKRLKE
CCCCCEEEEEEHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
NKNVKIAIDDFGTGYSSLSYLKDIDTDILKIDMSFVRRIVEDEKIRAIVKAIITLAKDLN
CCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSTLAEGVETKEQYEILKSMGVDLVQGFYFSKPLPENEAQLLI
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]