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The map label for this gene is sodC2

Identifier: 15605785

GI number: 15605785

Start: 149124

End: 149639

Strand: Direct

Name: sodC2

Synonym: aq_238

Alternate gene names: 15605785

Gene position: 149124-149639 (Clockwise)

Preceding gene: 15605783

Following gene: 15605786

Centisome position: 9.61

GC content: 45.35

Gene sequence:

>516_bases
ATGAAAAAGTTAAGTGGTGTTTTAGCGGGAAGCCTTTTACTCATTTCCGCTTCCTTTTCTCAGGACCTGAAAGCTCACGC
GGAGCTTATAAATACAGAGGGAGAGGTCATAGGAAAGGCTGAGCTCATAGAAACTAACTCCGGAGTTCTTATAAAGCTAA
ATGCAAAAGGTCTACCACCTAATGCGGAGCTTGCTTTCCACATACATGAAAGGGGAGAGTGCAAACCGCCGACTTTCAAA
AGTGCGAAGGGACACTTTAACCCTTATGGAAAGAAACACGGCCTTTTAAACCCTGAAGGTCCCCACGCTGGAGACATGCC
CAATATTTACACCGATGACAAGGGAAACGTAAGGGTTCAGGTTTTAAATCCCTTCGTAACATTGAAGAAAGGGGAGAAAA
ACAGTTTATTTAAAGAGGGAGGAACGGCACTCGTAATTCACAGCGGACCCGATGATTATAAATCGGATCCTGCGGGGAAC
GCGGGTAAAAGAATAGCCTGCGGGGTGATAAGGTAA

Upstream 100 bases:

>100_bases
TGAGCTGAACGTATTGAGAACCGAAATTAACGACGAGTATAGGTCTTCTCTGCATAAGGATAAATAATATATAGATGGAT
GAATAAAGGGAGGTGAAACC

Downstream 100 bases:

>100_bases
TTTCCTTTCCTCTTTATCTTTTAAACTTTTGTATGACCCAAATTCTCAAACTTCTTTTCCCGAAAATTTAAAATTTTCCT
ATGGCTATCGATAAGGAAAA

Product: superoxide dismutase (Cu/Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKKLSGVLAGSLLLISASFSQDLKAHAELINTEGEVIGKAELIETNSGVLIKLNAKGLPPNAELAFHIHERGECKPPTFK
SAKGHFNPYGKKHGLLNPEGPHAGDMPNIYTDDKGNVRVQVLNPFVTLKKGEKNSLFKEGGTALVIHSGPDDYKSDPAGN
AGKRIACGVIR

Sequences:

>Translated_171_residues
MKKLSGVLAGSLLLISASFSQDLKAHAELINTEGEVIGKAELIETNSGVLIKLNAKGLPPNAELAFHIHERGECKPPTFK
SAKGHFNPYGKKHGLLNPEGPHAGDMPNIYTDDKGNVRVQVLNPFVTLKKGEKNSLFKEGGTALVIHSGPDDYKSDPAGN
AGKRIACGVIR
>Mature_171_residues
MKKLSGVLAGSLLLISASFSQDLKAHAELINTEGEVIGKAELIETNSGVLIKLNAKGLPPNAELAFHIHERGECKPPTFK
SAKGHFNPYGKKHGLLNPEGPHAGDMPNIYTDDKGNVRVQVLNPFVTLKKGEKNSLFKEGGTALVIHSGPDDYKSDPAGN
AGKRIACGVIR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI4507149, Length=136, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787934, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71981879, Length=134, Percent_Identity=35.0746268656716, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71981876, Length=134, Percent_Identity=35.0746268656716, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17554806, Length=176, Percent_Identity=33.5227272727273, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322564, Length=126, Percent_Identity=38.8888888888889, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC2_AQUAE (O66602)

Other databases:

- EMBL:   AE000657
- PIR:   F70321
- RefSeq:   NP_213162.1
- ProteinModelPortal:   O66602
- SMR:   O66602
- GeneID:   1192836
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_238
- NMPDR:   fig|224324.1.peg.177
- HOGENOM:   HBG609879
- OMA:   ELINTEG
- PhylomeDB:   O66602
- ProtClustDB:   CLSK233141
- BioCyc:   AAEO224324:AQ_238-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 18231; Mature: 18231

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLSGVLAGSLLLISASFSQDLKAHAELINTEGEVIGKAELIETNSGVLIKLNAKGLPP
CCCHHHHHHCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCC
NAELAFHIHERGECKPPTFKSAKGHFNPYGKKHGLLNPEGPHAGDMPNIYTDDKGNVRVQ
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEE
VLNPFVTLKKGEKNSLFKEGGTALVIHSGPDDYKSDPAGNAGKRIACGVIR
EECCEEEEECCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKKLSGVLAGSLLLISASFSQDLKAHAELINTEGEVIGKAELIETNSGVLIKLNAKGLPP
CCCHHHHHHCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCC
NAELAFHIHERGECKPPTFKSAKGHFNPYGKKHGLLNPEGPHAGDMPNIYTDDKGNVRVQ
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEE
VLNPFVTLKKGEKNSLFKEGGTALVIHSGPDDYKSDPAGNAGKRIACGVIR
EECCEEEEECCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320