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The map label for this gene is nusB

Identifier: 15605713

GI number: 15605713

Start: 82284

End: 82730

Strand: Direct

Name: nusB

Synonym: aq_133

Alternate gene names: 15605713

Gene position: 82284-82730 (Clockwise)

Preceding gene: 15605712

Following gene: 15605714

Centisome position: 5.3

GC content: 42.95

Gene sequence:

>447_bases
ATGAGGTATCGGAAAGGTGCAAGGGACACCGCCTTCCTGGTTTTATACAGGTGGGACTTAAGGGGTGAAAATCCAGGAGA
ACTCTTCAAAGAAGTTGTGGAGGAAAAAAACATTAAAAACAAGGACGCCTACGAATACGCCAAAAAGCTTGTGGATACCG
CGGTAAGGCACATAGAGGAAATAGACTCTATAATAGAAAAACACCTGAAGGGCTGGAGTATAGACAGACTCGGCTACGTT
GAGAGGAATGCCCTGAGGCTTGGAGTTGCCGAACTCATCTTTTTAAAGAGTAAGGAACCTGGAAGGGTGTTTATAGACAT
AGTGGATTTAGTAAAGAAGTACGCGGACGAAAAGGCAGGAAAGTTCGTAAACGGAGTGCTTTCCGCCATTTACAAGGCTT
ACATTACTTCTTCAAAAGAAGAAAAACCAAGTTTAAAATCAGAGTGA

Upstream 100 bases:

>100_bases
TGGAGCAGGCGATAGAAAGGGCGGGAACAAAGCACGGGAATAAGGGCTGGGAAGCTGCACTTTCCGCAATAGAAATGGCA
AACTTATTTAAGAGTCTGAG

Downstream 100 bases:

>100_bases
GCAGGAGGCTGAGCAAAATCGCGGTAGTTATGGGAATGTAAACAACGAAGTTGTCCCTCTTTATGTATATATCACCGGGA
AGTTTCCCAAGTCCCAGGGG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYV
ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE

Sequences:

>Translated_148_residues
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYV
ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE
>Mature_148_residues
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYV
ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_AQUAE (O66530)

Other databases:

- EMBL:   AE000657
- PIR:   G70312
- RefSeq:   NP_213090.1
- PDB:   2JR0
- PDBsum:   2JR0
- ProteinModelPortal:   O66530
- SMR:   O66530
- GeneID:   1192673
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_133
- NMPDR:   fig|224324.1.peg.105
- HOGENOM:   HBG734409
- OMA:   YGTENSG
- ProtClustDB:   PRK00202
- BioCyc:   AAEO224324:AQ_133-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17112; Mature: 17112

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEE
CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
KFVNGVLSAIYKAYITSSKEEKPSLKSE
HHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEE
CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
KFVNGVLSAIYKAYITSSKEEKPSLKSE
HHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320