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The map label for this gene is ssb

Identifier: 15605660

GI number: 15605660

Start: 40735

End: 41178

Strand: Direct

Name: ssb

Synonym: aq_064

Alternate gene names: 15605660

Gene position: 40735-41178 (Clockwise)

Preceding gene: 15605659

Following gene: 15605661

Centisome position: 2.63

GC content: 43.24

Gene sequence:

>444_bases
ATGCTCAATAAGGTTTTTATAATAGGAAGACTTACGGGTGACCCCGTTATAACTTATCTACCGAGCGGAACGCCCGTAGT
AGAGTTTACTCTGGCTTACAACAGAAGGTATAAAAACCAGAACGGTGAATTTCAGGAGGAAAGTCACTTCTTTGACGTAA
AGGCGTACGGAAAAATGGCTGAAGACTGGGCTACACGCTTCTCGAAAGGATACCTCGTACTCGTAGAGGGAAGACTCTCC
CAGGAAAAGTGGGAGAAAGAAGGAAAGAAGTTCTCAAAGGTCAGGATAATAGCGGAAAACGTAAGATTAATAAACAGGCC
GAAAGGTGCTGAACTTCAAGCAGAAGAAGAGGAGGAAGTTCCTCCCATTGAGGAGGAAATTGAAAAACTCGGTAAAGAGG
AAGAGAAGCCTTTTACCGATGAAGAGGACGAAATACCTTTTTAA

Upstream 100 bases:

>100_bases
AACCCCCAACTCCCCAACGAGCTTGACTTCCAGCTGAAGATTGACGAAGACGTGATAAGGTGGTTAAATTTTCAAATTAA
GGAGAGTGAAGTAAAGAAAA

Downstream 100 bases:

>100_bases
TTTTGAGGAGGTTAAAGTATGGTAGTGAGAGCTCCTAAGAAGAAAGTTTGTATGTACTGTGAACAAAAGAGAGAGCCAGA
TTATAAAAACTACGAAGAAC

Product: single stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS
QEKWEKEGKKFSKVRIIAENVRLINRPKGAELQAEEEEEVPPIEEEIEKLGKEEEKPFTDEEDEIPF

Sequences:

>Translated_147_residues
MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS
QEKWEKEGKKFSKVRIIAENVRLINRPKGAELQAEEEEEVPPIEEEIEKLGKEEEKPFTDEEDEIPF
>Mature_147_residues
MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS
QEKWEKEGKKFSKVRIIAENVRLINRPKGAELQAEEEEEVPPIEEEIEKLGKEEEKPFTDEEDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Escherichia coli, GI1790494, Length=87, Percent_Identity=34.4827586206897, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSB_AQUAE (O66475)

Other databases:

- EMBL:   AE000657
- PIR:   H70305
- RefSeq:   NP_213035.1
- ProteinModelPortal:   O66475
- SMR:   O66475
- GeneID:   1192488
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_064
- NMPDR:   fig|224324.1.peg.50
- HOGENOM:   HBG755544
- OMA:   ANDAING
- ProtClustDB:   CLSK2748239
- BioCyc:   AAEO224324:AQ_064-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 17133; Mature: 17133

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMA
CCCEEEEEEEECCCCEEEECCCCCCEEEEEEEECHHCCCCCCCCCCCCEEEEHHHHHHHH
EDWATRFSKGYLVLVEGRLSQEKWEKEGKKFSKVRIIAENVRLINRPKGAELQAEEEEEV
HHHHHHHCCCEEEEEECCCCHHHHHHHCCHHHHHEEEECCCCEECCCCCCCCCCCCCCCC
PPIEEEIEKLGKEEEKPFTDEEDEIPF
CCHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMA
CCCEEEEEEEECCCCEEEECCCCCCEEEEEEEECHHCCCCCCCCCCCCEEEEHHHHHHHH
EDWATRFSKGYLVLVEGRLSQEKWEKEGKKFSKVRIIAENVRLINRPKGAELQAEEEEEV
HHHHHHHCCCEEEEEECCCCHHHHHHHCCHHHHHEEEECCCCEECCCCCCCCCCCCCCCC
PPIEEEIEKLGKEEEKPFTDEEDEIPF
CCHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320