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The map label for this gene is rbcL-1

Identifier: 11499182

GI number: 11499182

Start: 1425062

End: 1426375

Strand: Reverse

Name: rbcL-1

Synonym: AF1587

Alternate gene names: NA

Gene position: 1426375-1425062 (Counterclockwise)

Preceding gene: 11499183

Following gene: 11499179

Centisome position: 65.48

GC content: 53.42

Gene sequence:

>1314_bases
ATGCAGCTCGGCGTGAGACTGAGATTTCAGAAGTTTGAGTATCCTGAGGCAAATCCGGAAGCACTGCCTGAGGGCATCGA
CCCAGAGGAGTACATCATCGGCACCTACTACATGTCCTTCCCGAAGGGGATGAATCCCTTCGAAATCACTCAAGTTCTCG
CCTTGGAGCAGAGCACGGGGACTTGGCTTCCAGTGCCGGGAGAGACGCCTGAAGTAAGGAGGAAGCACGTCGCAAAGGTT
GTTGGCGTTTACGAAATTCCAGACTACGAGATTATGGTTCCTCAGGAGGTGGACTGGAGGAATTTCATCGTGCAGATAGC
CTTTCCGTGGAGGAACATAGGGAGCAAGCTCTCAATGCTGTTTTCCACCGTTGTGGGGAACATTTCAATGGCTCCAAAGC
TTAAGCTGCTCGACCTGAGGTTCCCGAAGGAGTTCGTAAAGGGCTTCAAGGGGCCAAAGTTCGGAATTGAAGGTGTCAGG
GATGTGCTTGGAGTTAAAGATCGCCCGCTGCTAAACAACATGATAAAGCCCGACGTTTACTCCCCGCCAGATTTGGGAGC
AAAGCTCGCCTACGAGGTGGCGAGGGGAGGTGTGGACATCATCAAGGACGATGAGCTTCTTGCAAATCCAGAGTTCAACA
GAATAGAAGAGAGAGTGCCGAAATTCATGGAGGCCATAGACAGGGCCGACGAGGAGAAGGGGGAGAAGACGCTTTACGCT
GTGAATGTTACCGCTGACCTGCCTGAGGTGCTGGAGAATGCGGAGAGGGCGATTGAGCTTGGCGCCAACTGTCTGCTGGT
CAACTACCTCGCCACCGGCTTTCCGGTGCTGAGAGCCTTGGCCGAGGATGAGAGCATAAAGGTGCCCATTATGGCCCATA
TGGATGTTGCCGGAGCCTACTACGTCTCTCCGATTTCAGGAGTGAGGAGCACGCTTATACTCGGAAAGCTTCCGAGGCTG
GCTGGGGCAGATATTGTCGTTTATCCCGCCCCTTACGGAAAGGCTCCGATGATGGAGGAGAAGTACATTGAGGTAGCAAA
ACAGCACAGATATCCCTTCTACCACATAAAGCCCTGCTTCCCCATGCCATCAGGCGGAATAGCACCGATTATGGTTCCAA
AGCTGGTTAACACGCTCGGTAAGGACTTCGTTGTTGCAGCAGGAGGAGGGATTCATGCACATCCCGATGGCCCTGCTGCT
GGAGCGAGAGCATTCAGGCAGGCGATAGATGCGGCAATGCAGGGCTACACAGACCTGAGAAAGTATGCGGAGGAGAACAA
CCTGCAGGAGCTTTTGAAGGCTCTGCAGCTTTGA

Upstream 100 bases:

>100_bases
ATGGGTGTGGAGAGAATTCCGCTAATAGTCGAGGTTGAGGATGATGGCGGGAGGAGAGAGATAGACTTCAGGGAAGTCTT
CCCGCAGCTGGGGTGATGGG

Downstream 100 bases:

>100_bases
TTACTTAAATTTTTGAGGTTAGTAAGATTCGGATTTCTGTTTTATATGTTGAGATTCCTGCAGGGTGTTTCTGGTTGGGT
ATGGATGGGAGTATTCGGCG

Product: ribulose bisphosphate carboxylase, large subunit (rbcL-1)

Products: 3-phospho-D-glycerate; H+

Alternate protein names: RuBisCO-like protein

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MQLGVRLRFQKFEYPEANPEALPEGIDPEEYIIGTYYMSFPKGMNPFEITQVLALEQSTGTWLPVPGETPEVRRKHVAKV
VGVYEIPDYEIMVPQEVDWRNFIVQIAFPWRNIGSKLSMLFSTVVGNISMAPKLKLLDLRFPKEFVKGFKGPKFGIEGVR
DVLGVKDRPLLNNMIKPDVYSPPDLGAKLAYEVARGGVDIIKDDELLANPEFNRIEERVPKFMEAIDRADEEKGEKTLYA
VNVTADLPEVLENAERAIELGANCLLVNYLATGFPVLRALAEDESIKVPIMAHMDVAGAYYVSPISGVRSTLILGKLPRL
AGADIVVYPAPYGKAPMMEEKYIEVAKQHRYPFYHIKPCFPMPSGGIAPIMVPKLVNTLGKDFVVAAGGGIHAHPDGPAA
GARAFRQAIDAAMQGYTDLRKYAEENNLQELLKALQL

Sequences:

>Translated_437_residues
MQLGVRLRFQKFEYPEANPEALPEGIDPEEYIIGTYYMSFPKGMNPFEITQVLALEQSTGTWLPVPGETPEVRRKHVAKV
VGVYEIPDYEIMVPQEVDWRNFIVQIAFPWRNIGSKLSMLFSTVVGNISMAPKLKLLDLRFPKEFVKGFKGPKFGIEGVR
DVLGVKDRPLLNNMIKPDVYSPPDLGAKLAYEVARGGVDIIKDDELLANPEFNRIEERVPKFMEAIDRADEEKGEKTLYA
VNVTADLPEVLENAERAIELGANCLLVNYLATGFPVLRALAEDESIKVPIMAHMDVAGAYYVSPISGVRSTLILGKLPRL
AGADIVVYPAPYGKAPMMEEKYIEVAKQHRYPFYHIKPCFPMPSGGIAPIMVPKLVNTLGKDFVVAAGGGIHAHPDGPAA
GARAFRQAIDAAMQGYTDLRKYAEENNLQELLKALQL
>Mature_437_residues
MQLGVRLRFQKFEYPEANPEALPEGIDPEEYIIGTYYMSFPKGMNPFEITQVLALEQSTGTWLPVPGETPEVRRKHVAKV
VGVYEIPDYEIMVPQEVDWRNFIVQIAFPWRNIGSKLSMLFSTVVGNISMAPKLKLLDLRFPKEFVKGFKGPKFGIEGVR
DVLGVKDRPLLNNMIKPDVYSPPDLGAKLAYEVARGGVDIIKDDELLANPEFNRIEERVPKFMEAIDRADEEKGEKTLYA
VNVTADLPEVLENAERAIELGANCLLVNYLATGFPVLRALAEDESIKVPIMAHMDVAGAYYVSPISGVRSTLILGKLPRL
AGADIVVYPAPYGKAPMMEEKYIEVAKQHRYPFYHIKPCFPMPSGGIAPIMVPKLVNTLGKDFVVAAGGGIHAHPDGPAA
GARAFRQAIDAAMQGYTDLRKYAEENNLQELLKALQL

Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBLL_ARCFU (O28685)

Other databases:

- EMBL:   AE000782
- PIR:   B69448
- RefSeq:   NP_070416.1
- ProteinModelPortal:   O28685
- GeneID:   1484815
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF1587
- NMPDR:   fig|224325.1.peg.1577
- TIGR:   AF_1587
- HOGENOM:   HBG405441
- OMA:   PGPKFGV
- ProtClustDB:   CLSK2517122
- BioCyc:   AFUL224325:AF_1587-MONOMER
- GO:   GO:0009536
- InterPro:   IPR000685
- InterPro:   IPR017443
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: 4.1.1.39

Molecular weight: Translated: 48561; Mature: 48561

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 176-176 ACT_SITE 293-293

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLGVRLRFQKFEYPEANPEALPEGIDPEEYIIGTYYMSFPKGMNPFEITQVLALEQSTG
CCCCEEEEEEECCCCCCCHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHEECCCC
TWLPVPGETPEVRRKHVAKVVGVYEIPDYEIMVPQEVDWRNFIVQIAFPWRNIGSKLSML
CEEECCCCCHHHHHHHHHHHHHEEECCCCEEECCCCCCCCEEEEEEEECHHHHHHHHHHH
FSTVVGNISMAPKLKLLDLRFPKEFVKGFKGPKFGIEGVRDVLGVKDRPLLNNMIKPDVY
HHHHHCCCCCCCCEEEEECCCCHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCC
SPPDLGAKLAYEVARGGVDIIKDDELLANPEFNRIEERVPKFMEAIDRADEEKGEKTLYA
CCCCCCHHHHHHHHHCCCEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VNVTADLPEVLENAERAIELGANCLLVNYLATGFPVLRALAEDESIKVPIMAHMDVAGAY
EEECCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE
YVSPISGVRSTLILGKLPRLAGADIVVYPAPYGKAPMMEEKYIEVAKQHRYPFYHIKPCF
EECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC
PMPSGGIAPIMVPKLVNTLGKDFVVAAGGGIHAHPDGPAAGARAFRQAIDAAMQGYTDLR
CCCCCCCCHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
KYAEENNLQELLKALQL
HHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MQLGVRLRFQKFEYPEANPEALPEGIDPEEYIIGTYYMSFPKGMNPFEITQVLALEQSTG
CCCCEEEEEEECCCCCCCHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHEECCCC
TWLPVPGETPEVRRKHVAKVVGVYEIPDYEIMVPQEVDWRNFIVQIAFPWRNIGSKLSML
CEEECCCCCHHHHHHHHHHHHHEEECCCCEEECCCCCCCCEEEEEEEECHHHHHHHHHHH
FSTVVGNISMAPKLKLLDLRFPKEFVKGFKGPKFGIEGVRDVLGVKDRPLLNNMIKPDVY
HHHHHCCCCCCCCEEEEECCCCHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCC
SPPDLGAKLAYEVARGGVDIIKDDELLANPEFNRIEERVPKFMEAIDRADEEKGEKTLYA
CCCCCCHHHHHHHHHCCCEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VNVTADLPEVLENAERAIELGANCLLVNYLATGFPVLRALAEDESIKVPIMAHMDVAGAY
EEECCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE
YVSPISGVRSTLILGKLPRLAGADIVVYPAPYGKAPMMEEKYIEVAKQHRYPFYHIKPCF
EECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC
PMPSGGIAPIMVPKLVNTLGKDFVVAAGGGIHAHPDGPAAGARAFRQAIDAAMQGYTDLR
CCCCCCCCHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
KYAEENNLQELLKALQL
HHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O

Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475