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The map label for this gene is ccdA

Identifier: 11498662

GI number: 11498662

Start: 963004

End: 963576

Strand: Reverse

Name: ccdA

Synonym: AF1057

Alternate gene names: NA

Gene position: 963576-963004 (Counterclockwise)

Preceding gene: 11498663

Following gene: 11498661

Centisome position: 44.23

GC content: 50.96

Gene sequence:

>573_bases
ATGCTGATGGCCTTCGCCCTTGGCATATTATCCGTCTTCTCTCCCTGCGTCCTTCCCGTAGTTCCCCTCATCTTCGCGGG
TTCGAGGGGAAGGGCTTTGGATGCTTTCCTGATTGTTGCAGGCTTAACCATCAGCATGCTCATTCTCGGCTACACCGCCT
CGCTCTTCTTTGGTTTTTTCAGAGTTGTTGCAATGCTGTTTCTCCTAATTTTCGCCTTAATTCTGCTATCTGACGAGCTT
GACGAAAAGGTCTCGATTTTTGCCTCAAGGATGACCTCCGGACTTTCGTGGAAAATCCAGACTCTGCCTTCCTTCTTTTT
CGGAATGCTCCTCGCCTTCCTCTGGCTACCATGCATACTCCCCTTTGCGGGGATAGCCATCAGCCAGACTTTGCTTTCAG
AAAACCCGCTCGTGATGCTCTCCTACGGCCTTGGAATGGCCGTAACCATCGCTGCGGTCTTCAAGATGGGAGAGAAATTT
GTCAAGGCCAACTTCCAGCTCATCAGAAAAGTTACTGGAGCGATTGTGCTGCTCTACCTCGCCTATTTCGCGCTTACGGA
GGTGCTGTTGTGA

Upstream 100 bases:

>100_bases
GGTTGTGGATTTAATCAGCGAAAAAATCGAGCTTGACATTGGTGAAGTTTACAGAAGATGAATTTAAATATACATTTCTT
TTTCAATTTTTATGCTTGAG

Downstream 100 bases:

>100_bases
GGGGATTCCTGATTGTGGGAAACAAGGCCTTCACACAGCCCTTCAGCCTCAACGACTTGCCGGGGGCGGGAAGAATGGAT
GTTCTCTGCCGCTGCACATC

Product: cytochrome C-type biogenesis protein (ccdA)

Products: NA

Alternate protein names: Cytochrome C-Type Biogenesis Protein CcdA; Cytochrome C-Type Biogenesis Protein

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLMAFALGILSVFSPCVLPVVPLIFAGSRGRALDAFLIVAGLTISMLILGYTASLFFGFFRVVAMLFLLIFALILLSDEL
DEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLWLPCILPFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKF
VKANFQLIRKVTGAIVLLYLAYFALTEVLL

Sequences:

>Translated_190_residues
MLMAFALGILSVFSPCVLPVVPLIFAGSRGRALDAFLIVAGLTISMLILGYTASLFFGFFRVVAMLFLLIFALILLSDEL
DEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLWLPCILPFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKF
VKANFQLIRKVTGAIVLLYLAYFALTEVLL
>Mature_190_residues
MLMAFALGILSVFSPCVLPVVPLIFAGSRGRALDAFLIVAGLTISMLILGYTASLFFGFFRVVAMLFLLIFALILLSDEL
DEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLWLPCILPFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKF
VKANFQLIRKVTGAIVLLYLAYFALTEVLL

Specific function: Unknown

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20770; Mature: 20770

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMAFALGILSVFSPCVLPVVPLIFAGSRGRALDAFLIVAGLTISMLILGYTASLFFGFF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVVAMLFLLIFALILLSDELDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLWLPCIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKFVKANFQLIRKVTGAIVLLYL
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYFALTEVLL
HHHHHHHHHC
>Mature Secondary Structure
MLMAFALGILSVFSPCVLPVVPLIFAGSRGRALDAFLIVAGLTISMLILGYTASLFFGFF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVVAMLFLLIFALILLSDELDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLWLPCIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKFVKANFQLIRKVTGAIVLLYL
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYFALTEVLL
HHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA