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Identifier: 11497729

GI number: 11497729

Start: 101220

End: 101543

Strand: Reverse

Name: Not Available

Synonym: AF0109

Alternate gene names: 11497729

Gene position: 101543-101220 (Counterclockwise)

Preceding gene: 11497731

Following gene: 11497728

Centisome position: 4.66

GC content: 48.77

Gene sequence:

>324_bases
GTGCTCAGAAGGGACAAGAAGAGGGAGTCGAGGATTGCCAGAGAGAGGGTTTTTTACCTCATAAAAAGGGCTGAGGAGTG
GAAAAACATCGACTACGAGCTTGCAAGGAGATACGTTGAGCTGGCAAGGAAAATTGCGATGAGGTACAGGGTGAGAATTC
CGCGAGAGCTGAAGGCAACTTACTGCAAGAAGTGCCTCTACCCCTACAAGGCTGGGAAATTCAGAGTGAGGGTGAGGAAG
AGCAGGGTTATTATCACATGCCTCAACTGCGGTTTTGAGAGGAGAATTCCCATCCGGCCCAAAAGAGTAAACCGCAAAGT
TTAA

Upstream 100 bases:

>100_bases
GCTTCGAAGTCCTTCTCTGCAAGCTCTCTGTACTTCTGAGGGTCGAATTTCATAACGGCTGAGATACAAAAGGCTATTTA
TCTTTTTGTTTACTGCCTGC

Downstream 100 bases:

>100_bases
ATTGCCACTTTGAAACTAAGTAGCATGACAAAGATTGGCAAGAAAATAAGAATTGAGAGAATAATTAACCGGGAAAGCAG
GAATACCGTAATCGTCCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MLRRDKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKATYCKKCLYPYKAGKFRVRVRK
SRVIITCLNCGFERRIPIRPKRVNRKV

Sequences:

>Translated_107_residues
MLRRDKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKATYCKKCLYPYKAGKFRVRVRK
SRVIITCLNCGFERRIPIRPKRVNRKV
>Mature_107_residues
MLRRDKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKATYCKKCLYPYKAGKFRVRVRK
SRVIITCLNCGFERRIPIRPKRVNRKV

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_ARCFU (O30127)

Other databases:

- EMBL:   AE000782
- PIR:   E69263
- RefSeq:   NP_068950.1
- ProteinModelPortal:   O30127
- SMR:   O30127
- GeneID:   1483321
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF0109
- NMPDR:   fig|224325.1.peg.109
- TIGR:   AF_0109
- HOGENOM:   HBG731499
- OMA:   RANAETH
- ProtClustDB:   CLSK2746306
- BioCyc:   AFUL224325:AF_0109-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 13307; Mature: 13307

Theoretical pI: Translated: 11.65; Mature: 11.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRDKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKAT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YCKKCLYPYKAGKFRVRVRKSRVIITCLNCGFERRIPIRPKRVNRKV
HHHHHCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRRDKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKAT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YCKKCLYPYKAGKFRVRVRKSRVIITCLNCGFERRIPIRPKRVNRKV
HHHHHCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475