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Identifier: 11497676

GI number: 11497676

Start: 61191

End: 61331

Strand: Reverse

Name: Not Available

Synonym: AF0056

Alternate gene names: 11497676

Gene position: 61331-61191 (Counterclockwise)

Preceding gene: 11497677

Following gene: 11497675

Centisome position: 2.82

GC content: 48.23

Gene sequence:

>141_bases
ATGTCCTACGTGTGCCTCATATGTGGGGCTGAAGTAGATATAGACACTGAAAAAAGCCTCGTTCAGTGCACGAACTGCGG
AGGAAGGATACTCATAAAGCCCCGCCCCCTCGCAAAGAAGAAGAGGGTAAAAGCCATATAA

Upstream 100 bases:

>100_bases
AATCTGGGAGTGCAGGCACTGCGGATACAAGTTCGCTGGAGGATGCTACCAGCCGGTAACGCCTGGAGGCAAAATTGTTG
AGAAGTCAGTGGGGTAAAAA

Downstream 100 bases:

>100_bases
CACATTAATCTATTTTACTTGTGAAGTTCGCCTGCAGAGCGATAACCAGGGGTAGGGCCGAAGGAGAGGCTTTGGTAACA
AAGGAATACATCTCTTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 46; Mature: 45

Protein sequence:

>46_residues
MSYVCLICGAEVDIDTEKSLVQCTNCGGRILIKPRPLAKKKRVKAI

Sequences:

>Translated_46_residues
MSYVCLICGAEVDIDTEKSLVQCTNCGGRILIKPRPLAKKKRVKAI
>Mature_45_residues
SYVCLICGAEVDIDTEKSLVQCTNCGGRILIKPRPLAKKKRVKAI

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1996

COG function: function code K; DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoP/eukaryotic RPC10 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOP_ARCFU (O30180)

Other databases:

- EMBL:   AE000782
- PIR:   H69256
- RefSeq:   NP_068897.1
- ProteinModelPortal:   O30180
- SMR:   O30180
- GeneID:   1483265
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF0056
- NMPDR:   fig|224325.1.peg.56
- TIGR:   AF_0056
- ProtClustDB:   CLSK2746290
- BioCyc:   AFUL224325:AF_0056-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00615
- InterPro:   IPR006591
- SMART:   SM00659

Pfam domain/function: PF03604 DNA_RNApol_7kD

EC number: =2.7.7.6

Molecular weight: Translated: 5063; Mature: 4932

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
8.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYVCLICGAEVDIDTEKSLVQCTNCGGRILIKPRPLAKKKRVKAI
CCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SYVCLICGAEVDIDTEKSLVQCTNCGGRILIKPRPLAKKKRVKAI
CEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475