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Identifier: 15679066

GI number: 15679066

Start: 962240

End: 962536

Strand: Direct

Name: Not Available

Synonym: MTH1053

Alternate gene names: 15679066

Gene position: 962240-962536 (Clockwise)

Preceding gene: 15679065

Following gene: 15679067

Centisome position: 54.94

GC content: 48.82

Gene sequence:

>297_bases
ATGGACATAGATAGAGGAATACGAGTCGCTGTAGATACTGGTAATGTTATCCTTGGATCAAAGAGGACGATTCAGAGCCT
CAAACTGGGTAAGGGTAAACTGGTGGTGATGGCCAGCAACATTCCAGAGGACCTCAAGGAGGACATAGAATACTATGCGA
AGCTATCAGAGATCCCGGTGTACACCCATGAAGGCACCAGTGTTGAACTGGGCTCTGTCTGCGGTAAACCATTCACCGTG
GGGGCCCTCTTAATCCAGGATCCAGGTGATTCAACAATACTGGAAATGGTGGGGTAG

Upstream 100 bases:

>100_bases
CTCACCGGTATCATAGAGAACATTATTATAGGGCAACCTATACCCCTGGGTACAGGTTCCGTTAGTGTTGTGATGAAAGA
AAGAAAATAGGAGGCAGTAG

Downstream 100 bases:

>100_bases
GTTGCTGTGACTATCAAATTTACCACAAATGAGATAAGGTACATTGCACTCTTTGAGAGCATGACGGGTGCAATGGTGAA
GGACTGCATCGTGGATGATG

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTV
GALLIQDPGDSTILEMVG

Sequences:

>Translated_98_residues
MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTV
GALLIQDPGDSTILEMVG
>Mature_98_residues
MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTV
GALLIQDPGDSTILEMVG

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=94, Percent_Identity=40.4255319148936, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=41.9354838709677, Blast_Score=83, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6321408, Length=93, Percent_Identity=41.9354838709677, Blast_Score=79, Evalue=1e-16,
Organism=Drosophila melanogaster, GI17864264, Length=85, Percent_Identity=48.2352941176471, Blast_Score=86, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24585096, Length=85, Percent_Identity=48.2352941176471, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_METTH (O27127)

Other databases:

- EMBL:   AE000666
- PIR:   A69007
- RefSeq:   NP_276183.1
- ProteinModelPortal:   O27127
- SMR:   O27127
- STRING:   O27127
- GeneID:   1471461
- GenomeReviews:   AE000666_GR
- KEGG:   mth:MTH1053
- NMPDR:   fig|187420.1.peg.1038
- eggNOG:   arNOG12921
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- PhylomeDB:   O27127
- ProtClustDB:   PRK01018
- BioCyc:   MTHE187420:MTH1053-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 10506; Mature: 10506

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPV
CCCCCCCEEEEECCCEEECCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCE
YTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILEMVG
EECCCCCEEECCCCCCCEEEEEEEEECCCCCCEEEECC
>Mature Secondary Structure
MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPV
CCCCCCCEEEEECCCEEECCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCE
YTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILEMVG
EECCCCCEEECCCCCCCEEEEEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463