| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646130
GI number: 15646130
Start: 1597196
End: 1600099
Strand: Reverse
Name: Not Available
Synonym: HP1521
Alternate gene names: 15646130
Gene position: 1600099-1597196 (Counterclockwise)
Preceding gene: 15646131
Following gene: 15646129
Centisome position: 95.94
GC content: 36.19
Gene sequence:
>2904_bases GTGAAAATCAAATTCAAACGATTGGACTATCAGGAGCAATGCCGGGACCAAATTTTAGGGGTGTTTAAGGGGATTGATTT GAAAGAGCCAGAAAATGACGCTCAAAGGATTTCTAACCCTGTTTTTGAAATAGGAGCGATCAAAGATCTTTTATTAGAAA ATATTGAGAATTTGCGATCGAAACAAAAAATAACCCAGGGGAGCGTGGGGATTGACAAGTCGTTAAACTGCGATATTTTA ATGGAAACAGGCACCGGGAAGACCTTTTGCTTTTTGGAATGTGTTTATGCCTTGCACAAAAACCACCATTTGTCAAAATT CATCGTTTTAACGCCAAGCAACGCCATTAAATTAGGGGTTTTAAAGAGCGTTGAAATCACCAGAGAATTTTTTAAAAGCG AGTATTCTAACACGCATTTAGAAAGCTATGAAGATATAGAAAGATTTATTCTAGCGAGCAACCATAAATGTTGTGTGTTG GTGATGACTTTTTCTGCCTTCAATAAAGAGAAAAACACTATTAATAAATCATGCCTAGAAAACACGAATCTATTCAATGG TGCAACAAGTTACATGCAAGCTTTAGTGAGTATGCGCCCCATCGTCATCATGGACGAACCGCACCGATTTTTAGGCGATA AAACAAAAAAATATTTGGAACAATTAAACGCTTTACTCACGCTCAGGTTTGGGGCGACTTTTAAAGATGATTATAATAAT CTGATTTATACGCTAGATAGCAAAAAAGCGTTTGATTGTGCCCTAGTGAAAAGCATTAGCGTGGCGTCTGTGGGGGAGAG TAACGAGTGTTTTTTAGAGCTTAAAGGGATTGAAAAAAAAGAAGCTGCAATTAACTACACGGATTTAGAAAATAAAACTC AAAGCGTCAAAGTCAAAGAGCATGATAATTTAGGGGTGGTAACTCAAATCAGCGCTTTAGAAGATTACATTGTAGAAAAA ATCACTAAAACTGAGATTCGTTTTCTCAATGGCTTTAATTTGTTACTGGATCAAAAAGAGCCTTTTTCTCATCTTTTAGA GGGCGAGCAAGAAGTGATGCTGAAAGAAGCGATAAAAAGCCATTTTGAAAGAGAAGAAGGGCTTTTTAAAAAGGGGATTA AAGCCTTGTGCATGGTGTTTATTAGCGGGGTGAATAGCTATTTAAGCGAGAATGAAAAGCCGGCTAAATTGGCCCTTTTA TTTGAAAAACTCTACCAGCAAAAGCTTGAAGAAGTCTTAAAAAAGCCTTTAGATGAAAATTATAGAGCGTATTTAGAGTG CACTAGAGAAGATATTAAAAAAGTGCATGGAGGGTATTTCGCTAAAAGCAAAAAAGAGGGCGATGAAACTAAAACGATCG AACTCATTTTAAAAGAAAAGGAAAAATTGCTGAGTTTTGATTCCGATCTCAGGTTTATTTTTTCGCAATGGGCGTTGCAA GAGGGGTGGGATAACCCTAACGTGATGACGATTTGCAAATTAGCCCCCAGCCATTCCAATATCACTAAATTGCAACAAAT CGGTAGGGGGTTAAGGCTCGCTGTGAATGATAAGGGCGAACGCATCACTAAAGAGCATGCTGATTTTGATTTTGTCAATG AATTGGTGGTGATCGTGCCGCAAGTGGAGGGGGATTTTGTGGGAGCGATCCAGCAAGAGATAAGCGAACACAGCTTGATT AAACAAGAATTTAGCGCAGAAGAGTTAGAAAAAAGCGGCGTTGTTAAAAAAGGGCGTTACGGGTTTTTATTGGAAACATT AGAGGGTTTGGGTTTTGGAGAAAAAACAGGTGATGAAAACTTTAAACTCACTCTCAATCAAAACGAATTTTTAGAAAAAG AGCCAGAACTTGAAAAATTAAAAGATGAAAAATACCTGGATTTTGAAAAATTAAAAGATTTTTTAAAAGATCGCTTGATT GGTAATTCCAGAGTGAGGGACAAAAACGAGCGAAAGAGTGAAAAAATCAAAATCAATAAAGAAAATTTTAAAAAATTTGA AACCTTATGGGAAAGTTTGAATCATCAAGCCCGGATCGCTTATGCCATTGATAGCGAGAGCTTGATTGATGAGATTGTCA AAAATATTAATTCTTCTTTTAATGTCAGTTCAAAAATCGTTTCGGTTACGACGCATAAAAAAGTAGAAACTATGGGAAAT AACGCCAAAACAGAGATTTTTGAGCGAGAAAACGCATGCGTGTGGAGTTTGCATGAATTTATCAGCGCCTTGTCCAATAA GGTGAAATTGAGTTTTAAAAGCGTGGCTAAAGTGTTGGAAAACATTGATGAAAACAAGTTTAATGAAATTAAAAAAAACG AACAAGAGGGATTAAGGCGCTTAGAAGAGCTGTTTTTGGAAATCATTTATCAAAATATTAAAGATAAAATTTCCTATCAA ATGCGCGAAACGACCATTAAAAACAGAAAAAACGATGCGTTTTATGATGAAAAGGGAGAGATTAGAGAGTTTTTAGACGG GAGTTTGGGGGCGGATAAATATGAGATTAAAAATTCAAGCGTGCGAGAAAAATGCCTGTATGAAAATTTCATGCAAGTGG ATAGCGAGATTGAAAAAGACACGATTGAAGAATCTAACGACACTAAAATCATTGTTTTTGGTAAGCTCCCTAGGGTTAAA ATCCCGATAGGGTTAAATCAAACTTATAGCCCTGATTTTGGGTATGTGGTTGAAAACAACGATAAAAAAGTGTTATTAGT GGTAGAAACTAAGGGGGTTGATAAAAAAAGCGAATTACGCCCTGAAGAAGAGCGGAAAATTTCAACCGCTAAGAAATTTT TTGAAGCTTTAAAAAAGCAAGGCGTGAATATTGAATACAAAACCAAAATGGAAAAAGATCAATTAAGCGCGTTGATTAAT GAAGTTTTAAATCGTAAAGATTAG
Upstream 100 bases:
>100_bases ATATGCCCGCTATCAGTAACGATAATTTGTGTTTGGAATTGGGCAGTAATTTGTTGGATTTGAAATTAGAGAGTGGCGAT TTAAAGATTAGGGGGTAGAG
Downstream 100 bases:
>100_bases AGCTAATAAGCTCAATTACTCTAATGTTTCACATGGAACAATTTCAATTTGAATCAATTTAAACTTAATCTTTAAAAAGG TCTTATTGAAATGAATACGA
Product: type III restriction enzyme R protein (res)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 967; Mature: 967
Protein sequence:
>967_residues MKIKFKRLDYQEQCRDQILGVFKGIDLKEPENDAQRISNPVFEIGAIKDLLLENIENLRSKQKITQGSVGIDKSLNCDIL METGTGKTFCFLECVYALHKNHHLSKFIVLTPSNAIKLGVLKSVEITREFFKSEYSNTHLESYEDIERFILASNHKCCVL VMTFSAFNKEKNTINKSCLENTNLFNGATSYMQALVSMRPIVIMDEPHRFLGDKTKKYLEQLNALLTLRFGATFKDDYNN LIYTLDSKKAFDCALVKSISVASVGESNECFLELKGIEKKEAAINYTDLENKTQSVKVKEHDNLGVVTQISALEDYIVEK ITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALL FEKLYQQKLEEVLKKPLDENYRAYLECTREDIKKVHGGYFAKSKKEGDETKTIELILKEKEKLLSFDSDLRFIFSQWALQ EGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLI KQEFSAEELEKSGVVKKGRYGFLLETLEGLGFGEKTGDENFKLTLNQNEFLEKEPELEKLKDEKYLDFEKLKDFLKDRLI GNSRVRDKNERKSEKIKINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGN NAKTEIFERENACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLRRLEELFLEIIYQNIKDKISYQ MRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSSVREKCLYENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVK IPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVDKKSELRPEEERKISTAKKFFEALKKQGVNIEYKTKMEKDQLSALIN EVLNRKD
Sequences:
>Translated_967_residues MKIKFKRLDYQEQCRDQILGVFKGIDLKEPENDAQRISNPVFEIGAIKDLLLENIENLRSKQKITQGSVGIDKSLNCDIL METGTGKTFCFLECVYALHKNHHLSKFIVLTPSNAIKLGVLKSVEITREFFKSEYSNTHLESYEDIERFILASNHKCCVL VMTFSAFNKEKNTINKSCLENTNLFNGATSYMQALVSMRPIVIMDEPHRFLGDKTKKYLEQLNALLTLRFGATFKDDYNN LIYTLDSKKAFDCALVKSISVASVGESNECFLELKGIEKKEAAINYTDLENKTQSVKVKEHDNLGVVTQISALEDYIVEK ITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALL FEKLYQQKLEEVLKKPLDENYRAYLECTREDIKKVHGGYFAKSKKEGDETKTIELILKEKEKLLSFDSDLRFIFSQWALQ EGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLI KQEFSAEELEKSGVVKKGRYGFLLETLEGLGFGEKTGDENFKLTLNQNEFLEKEPELEKLKDEKYLDFEKLKDFLKDRLI GNSRVRDKNERKSEKIKINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGN NAKTEIFERENACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLRRLEELFLEIIYQNIKDKISYQ MRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSSVREKCLYENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVK IPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVDKKSELRPEEERKISTAKKFFEALKKQGVNIEYKTKMEKDQLSALIN EVLNRKD >Mature_967_residues MKIKFKRLDYQEQCRDQILGVFKGIDLKEPENDAQRISNPVFEIGAIKDLLLENIENLRSKQKITQGSVGIDKSLNCDIL METGTGKTFCFLECVYALHKNHHLSKFIVLTPSNAIKLGVLKSVEITREFFKSEYSNTHLESYEDIERFILASNHKCCVL VMTFSAFNKEKNTINKSCLENTNLFNGATSYMQALVSMRPIVIMDEPHRFLGDKTKKYLEQLNALLTLRFGATFKDDYNN LIYTLDSKKAFDCALVKSISVASVGESNECFLELKGIEKKEAAINYTDLENKTQSVKVKEHDNLGVVTQISALEDYIVEK ITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALL FEKLYQQKLEEVLKKPLDENYRAYLECTREDIKKVHGGYFAKSKKEGDETKTIELILKEKEKLLSFDSDLRFIFSQWALQ EGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLI KQEFSAEELEKSGVVKKGRYGFLLETLEGLGFGEKTGDENFKLTLNQNEFLEKEPELEKLKDEKYLDFEKLKDFLKDRLI GNSRVRDKNERKSEKIKINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGN NAKTEIFERENACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLRRLEELFLEIIYQNIKDKISYQ MRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSSVREKCLYENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVK IPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVDKKSELRPEEERKISTAKKFFEALKKQGVNIEYKTKMEKDQLSALIN EVLNRKD
Specific function: This protein cuts the DNA outside of the recognition site. May also act as a helicase involved in unwinding DNA at the cleavage site. Protein only required for restriction but needs the presence of the modification enzyme [H]
COG id: COG3587
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VRR-NUC domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006935 - InterPro: IPR014883 [H]
Pfam domain/function: PF04851 ResIII; PF08774 VRR_NUC [H]
EC number: =3.1.21.5 [H]
Molecular weight: Translated: 111515; Mature: 111515
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKFKRLDYQEQCRDQILGVFKGIDLKEPENDAQRISNPVFEIGAIKDLLLENIENLRS CCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH KQKITQGSVGIDKSLNCDILMETGTGKTFCFLECVYALHKNHHLSKFIVLTPSNAIKLGV HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHH LKSVEITREFFKSEYSNTHLESYEDIERFILASNHKCCVLVMTFSAFNKEKNTINKSCLE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHCCHHHHHHHHHHH NTNLFNGATSYMQALVSMRPIVIMDEPHRFLGDKTKKYLEQLNALLTLRFGATFKDDYNN CCCCCCHHHHHHHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHHEEHEECCEECCCCCC LIYTLDSKKAFDCALVKSISVASVGESNECFLELKGIEKKEAAINYTDLENKTQSVKVKE EEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHEECCCCCCCCCCEEEEEE HDNLGVVTQISALEDYIVEKITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKS CCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCHHHHHHHHHHHH HFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKPLDEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC YRAYLECTREDIKKVHGGYFAKSKKEGDETKTIELILKEKEKLLSFDSDLRFIFSQWALQ HHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVP HCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCHHHHCCEEEEEE QVEGDFVGAIQQEISEHSLIKQEFSAEELEKSGVVKKGRYGFLLETLEGLGFGEKTGDEN CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCC FKLTLNQNEFLEKEPELEKLKDEKYLDFEKLKDFLKDRLIGNSRVRDKNERKSEKIKINK EEEEECCCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCHHEEECH ENFKKFETLWESLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGN HHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCHHEEEEEHHHHHHHCCC NAKTEIFERENACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLRR CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH LEELFLEIIYQNIKDKISYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCH VREKCLYENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYVVENN HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEECC DKKVLLVVETKGVDKKSELRPEEERKISTAKKFFEALKKQGVNIEYKTKMEKDQLSALIN CCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH EVLNRKD HHHCCCC >Mature Secondary Structure MKIKFKRLDYQEQCRDQILGVFKGIDLKEPENDAQRISNPVFEIGAIKDLLLENIENLRS CCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH KQKITQGSVGIDKSLNCDILMETGTGKTFCFLECVYALHKNHHLSKFIVLTPSNAIKLGV HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHH LKSVEITREFFKSEYSNTHLESYEDIERFILASNHKCCVLVMTFSAFNKEKNTINKSCLE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHCCHHHHHHHHHHH NTNLFNGATSYMQALVSMRPIVIMDEPHRFLGDKTKKYLEQLNALLTLRFGATFKDDYNN CCCCCCHHHHHHHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHHEEHEECCEECCCCCC LIYTLDSKKAFDCALVKSISVASVGESNECFLELKGIEKKEAAINYTDLENKTQSVKVKE EEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHEECCCCCCCCCCEEEEEE HDNLGVVTQISALEDYIVEKITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKS CCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCHHHHHHHHHHHH HFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKPLDEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC YRAYLECTREDIKKVHGGYFAKSKKEGDETKTIELILKEKEKLLSFDSDLRFIFSQWALQ HHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVP HCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCHHHHCCEEEEEE QVEGDFVGAIQQEISEHSLIKQEFSAEELEKSGVVKKGRYGFLLETLEGLGFGEKTGDEN CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCC FKLTLNQNEFLEKEPELEKLKDEKYLDFEKLKDFLKDRLIGNSRVRDKNERKSEKIKINK EEEEECCCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCHHEEECH ENFKKFETLWESLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGN HHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCHHEEEEEHHHHHHHCCC NAKTEIFERENACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLRR CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH LEELFLEIIYQNIKDKISYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCH VREKCLYENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYVVENN HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEECC DKKVLLVVETKGVDKKSELRPEEERKISTAKKFFEALKKQGVNIEYKTKMEKDQLSALIN CCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH EVLNRKD HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10217496; 1587478 [H]