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Identifier: 15646065

GI number: 15646065

Start: 1526219

End: 1526746

Strand: Reverse

Name: Not Available

Synonym: HP1456

Alternate gene names: 15646065

Gene position: 1526746-1526219 (Counterclockwise)

Preceding gene: 15646066

Following gene: 15646064

Centisome position: 91.54

GC content: 39.58

Gene sequence:

>528_bases
ATGAAAAATCAAGTTAAAAAAATTTTAGGGATGAGTGTGGTAGCAGCGATGGTGATCGTAGGTTGCAGCCATGCCCCAAA
ATCAGGTATCAGCAAAAGCAATAAGGCATACAAAGAAGCGACTAAAGGCGCTCCTGATTGGGTGGTAGGGGATTTAGAAA
AAGTGGCGAAGTATGAAAAGTATTCAGGGGTCTTTTTAGGAAGGGCTGAAGATTTGATCACTAATAACGATGTGGATTAT
TCTACTAACCAAGCTACAGCGAAAGCTAGGGCTAATTTAGCGGCGAATTTAAAATCCACTTTACAAAAAGATTTGGAAAA
TGAAAAAACTAGAACGGTAGACGCTTCTGGTAAAAGGTCCATCAGCGGCACTGATACTGAAAAAATTTCTCAATTAGTGG
ATAAGGAATTGATTGCTTCTAAAATGCTTGCCCGCTATGTTGGTAAAGATAGGGTTTTTGTTTTAGTGGGCTTGGATAAG
CAAATTGTGGATAAAGTGCGCGAAGAGTTGGGCATGGTTAAAAAGTAG

Upstream 100 bases:

>100_bases
ACAGGAAAACGGGTGAAGAGGTATGGAGCGATGTTAAGCCTATTGTGAAGAACGCTAGCAATAAGCGTATGTTTTAAATT
TATATTTGAAAGGATGAACA

Downstream 100 bases:

>100_bases
GGTTTTAATGAAACGCCTTGCTATTGCGCTTGTTTTGGTGTTGGGAGTGGCGTGGGGGAAGTCCTTGCCTAAGTGGGCAA
AAGATTGCTCAAAAGGAGTG

Product: membrane-associated lipoprotein (lpp20)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDY
STNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDK
QIVDKVREELGMVKK

Sequences:

>Translated_175_residues
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDY
STNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDK
QIVDKVREELGMVKK
>Mature_175_residues
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDY
STNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDK
QIVDKVREELGMVKK

Specific function: Could play a role in the pathogenesis of H.pylori by serving as an inflammatory mediator

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPP20_HELPJ (P0A0V1)

Other databases:

- EMBL:   AE001439
- PIR:   H64701
- RefSeq:   NP_224067.1
- STRING:   P0A0V1
- GeneID:   889907
- GenomeReviews:   AE001439_GR
- KEGG:   hpj:jhp1349
- eggNOG:   NOG113203
- HOGENOM:   HBG099345
- OMA:   ELVASKM
- ProtClustDB:   CLSK496501
- BioCyc:   HPYL85963:JHP1349-MONOMER
- InterPro:   IPR002217
- PIRSF:   PIRSF011368
- PRINTS:   PR01019

Pfam domain/function: PF02169 LPP20

EC number: NA

Molecular weight: Translated: 19108; Mature: 19108

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS
HCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC
ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS
HCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC
ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682