| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646008
GI number: 15646008
Start: 1458582
End: 1459724
Strand: Reverse
Name: Not Available
Synonym: HP1398
Alternate gene names: 15646008
Gene position: 1459724-1458582 (Counterclockwise)
Preceding gene: 15646011
Following gene: 15646007
Centisome position: 87.52
GC content: 44.53
Gene sequence:
>1143_bases ATGACTATTGGGCTAGTTAAAGAAAGCATGGATTTAGAATCCCGAGTGGCTTTAGTGCCTGATGATGTGGCACTAATCGT TCAAAAGGGCGTGGAGGTTTTAGTTCAAAATAGCGCCGGCGCTAATAGCGGTTATAGCAACGAAGCGTATGAGAGCGTTG GGGCTAAAATCGTGGATTCTAAAACGGCGTGGGGGCAGGATTTGGTGGTCAAATGCAAAGAGCCTTTAGAGCATGAATAC CCTTTGCTAAAAGAAAAAGCCACGCTGTTTAGTTACTTGGATTTAGCGTATCAAAAAAGCTTGTGCGAAATGTTTATAGA CAAAAAAATCACTTCTATTTGCACTGAAACCATTGCCGGGCCTAAAAATGATTACCCTATTTTAGCGCCTATGAGCGTGG TGGCTGGGAGGTTAGCCGCGCATTTAGTCCAGCATTATTTACTGGCTTTAGAGCATGTTAAGGGGTTTATGGGTAAGGGG GTCATGCTAGGGGGTTTATCGGGTGCGCAAAGGGCTAAAATTGTCGTAGTTGGGGGCGGTGTGGTTGGCATGGAGAGCGC GAAAGTCTTAAGCCAAATGGGGGCTAAAGTAACGATTTTAGAATTAGACTACGCTAAATTGCAAAACCACCCTTATTATC ATTTGTATGATTTAGAAGTTTTAAGCGTGAATGAAGCCAATATCATTCAAGCCTTAAACGGGGCGGTGGGTCTAGTGGGA GCGGTGTTAGTTACAGCGAGCCAAACCCCTAAAGTGATCTTAAGAAAGCATTTAAAATACATGCAAAAACAAGGGGTAGT CATTGATGTGGCTTGCGATTTAGGGGGGTGCATAGAGACCATACACCAGACAAGCCATTCTAACCCGGTGTATGTGGAAG AGGATTTGTTGCATTATGGCGTGCCGAACATGCCAGGGATTGTTGCTAAAACGAGCTCTACGGCTTATAGCCATGCGAGC GTGCCGTATTTGTTGTATTATTTAGAGCATGGCTTGAAGGGTTTTTTAACAGCCAACACTAAAATCGTGGCAAACACCCT TGGAGGCTTGAGCGCTTATAACGGCTATATCACCCAAGAAGGCATCGCTAAAGCGTTCAATCTGGCGTTCAAATCGCCTT TAGAGATTTTAAAGGAGCTTTGA
Upstream 100 bases:
>100_bases GTAAAAGAGTAAAACCATTCAAGTTTTTGATAGAAAAACACCCCAATAGTCTTATTGAGCGAATATAATCATAACTGACA CTATTATTTAAAGGATTAAC
Downstream 100 bases:
>100_bases AGCGAGCTTTAAAAAGAGCATGGCGATAAACCATGCGTCTTAATGTGTGGAAATATTTCAAAAAAAAACACTTTTTAATG TTATAATCTATCCTAAACAA
Product: alanine dehydrogenase (ald)
Products: NA
Alternate protein names: Stage V sporulation protein N [H]
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MTIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDSKTAWGQDLVVKCKEPLEHEY PLLKEKATLFSYLDLAYQKSLCEMFIDKKITSICTETIAGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKG VMLGGLSGAQRAKIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVG AVLVTASQTPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHAS VPYLLYYLEHGLKGFLTANTKIVANTLGGLSAYNGYITQEGIAKAFNLAFKSPLEILKEL
Sequences:
>Translated_380_residues MTIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDSKTAWGQDLVVKCKEPLEHEY PLLKEKATLFSYLDLAYQKSLCEMFIDKKITSICTETIAGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKG VMLGGLSGAQRAKIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVG AVLVTASQTPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHAS VPYLLYYLEHGLKGFLTANTKIVANTLGGLSAYNGYITQEGIAKAFNLAFKSPLEILKEL >Mature_379_residues TIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDSKTAWGQDLVVKCKEPLEHEYP LLKEKATLFSYLDLAYQKSLCEMFIDKKITSICTETIAGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGV MLGGLSGAQRAKIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVGA VLVTASQTPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHASV PYLLYYLEHGLKGFLTANTKIVANTLGGLSAYNGYITQEGIAKAFNLAFKSPLEILKEL
Specific function: This enzyme is a key factor in the assimilation of L- alanine as an energy source through the tricarboxylic acid cycle during sporulation [H]
COG id: COG0686
COG function: function code E; Alanine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AlaDH/PNT family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=349, Percent_Identity=27.7936962750716, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI122939153, Length=349, Percent_Identity=27.7936962750716, Blast_Score=110, Evalue=2e-24, Organism=Escherichia coli, GI1787887, Length=349, Percent_Identity=24.6418338108883, Blast_Score=91, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17550456, Length=355, Percent_Identity=25.6338028169014, Blast_Score=99, Evalue=5e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007698 - InterPro: IPR008142 - InterPro: IPR008143 - InterPro: IPR007886 - InterPro: IPR008141 [H]
Pfam domain/function: PF01262 AlaDh_PNT_C; PF05222 AlaDh_PNT_N [H]
EC number: =1.4.1.1 [H]
Molecular weight: Translated: 40997; Mature: 40866
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDS CCCCCCHHHCCCCCCEEECCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHCCEEECC KTAWGQDLVVKCKEPLEHEYPLLKEKATLFSYLDLAYQKSLCEMFIDKKITSICTETIAG CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQRAKIVVVGGG CCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECC VVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVG EECCHHHHHHHHCCCEEEEEEEEHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH AVLVTASQTPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHYG HHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCC VPNMPGIVAKTSSTAYSHASVPYLLYYLEHGLKGFLTANTKIVANTLGGLSAYNGYITQE CCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEEHHHCCHHHHCCCCCHH GIAKAFNLAFKSPLEILKEL HHHHHHHHHHHCHHHHHHCC >Mature Secondary Structure TIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDS CCCCCHHHCCCCCCEEECCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHCCEEECC KTAWGQDLVVKCKEPLEHEYPLLKEKATLFSYLDLAYQKSLCEMFIDKKITSICTETIAG CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQRAKIVVVGGG CCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECC VVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVG EECCHHHHHHHHCCCEEEEEEEEHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH AVLVTASQTPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHYG HHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCC VPNMPGIVAKTSSTAYSHASVPYLLYYLEHGLKGFLTANTKIVANTLGGLSAYNGYITQE CCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEEHHHCCHHHHCCCCCHH GIAKAFNLAFKSPLEILKEL HHHHHHHHHHHCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226620; 9384377 [H]