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Identifier: 15645951

GI number: 15645951

Start: 1398327

End: 1398773

Strand: Reverse

Name: Not Available

Synonym: HP1338

Alternate gene names: 15645951

Gene position: 1398773-1398327 (Counterclockwise)

Preceding gene: 15645956

Following gene: 15645950

Centisome position: 83.87

GC content: 40.94

Gene sequence:

>447_bases
ATGGATACACCCAATAAAGACGATTCAATCATCCGCTTTTCGGTTTCTTTACAACAAAATTTATTAGACGAATTAGACAA
CCGCATCATTAAAAACGGCTATTCTTCTCGATCAGAATTAGTGCGCGACATGATCAGAGAAAAATTAGTAGAAGACAATT
GGGCAGAAGACAACCCTAATGACGAGAGCAAAATCGCCGTGCTTGTGGTGATTTATGATCACCACCAAAGGGAATTAAAC
CAGCGCATGATAGACATTCAGCATGCCAGCGGGACGCATGTTTTATGCACCACGCACATTCACATGGATGAGCATAATTG
CTTGGAGACGATTATTTTACAAGGCAATTCGTTTGAAATCCAACGCTTGCAATTGGAAATTGGGGGGCTTAGGGGGGTTA
AATTCGCTAAATTGACTAAGGCGTCTAGCTTTGAATACAATGAATAG

Upstream 100 bases:

>100_bases
TAAATCCAGTTTGTATTATAATTGTTCATTTTAAATTAATTCAATCATACTAGCATGAGCGGCTTTTAACGAACTCATGC
CAAAAAAGGATTTTTCTCAA

Downstream 100 bases:

>100_bases
CGTCTTAAAATACAAAGAATTAGCGCTCTATGGAGGGAGTTTTGATCCCTTGCACAAGGCTCATTTAGCCATTATTGAGC
AAACTTTAGAATTATTGCCA

Product: nickel responsive regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELN
QRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYNE

Sequences:

>Translated_148_residues
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELN
QRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
>Mature_148_residues
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELN
QRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYNE

Specific function: Transcriptional regulator (Potential) [H]

COG id: COG0864

COG function: function code K; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory CopG/NikR family [H]

Homologues:

Organism=Escherichia coli, GI1789892, Length=108, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013321
- InterPro:   IPR002145
- InterPro:   IPR022988
- InterPro:   IPR010985
- InterPro:   IPR014864 [H]

Pfam domain/function: PF08753 NikR_C; PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 17148; Mature: 17148

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPN
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
DESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEI
CCCEEEEEEEEECCHHHHHHHHEEEEECCCCCEEEEEEEEECCCHHHEEEEEECCCCCEE
QRLQLEIGGLRGVKFAKLTKASSFEYNE
EEEEEEECCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPN
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
DESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEI
CCCEEEEEEEEECCHHHHHHHHEEEEECCCCCEEEEEEEEECCCHHHEEEEEECCCCCEE
QRLQLEIGGLRGVKFAKLTKASSFEYNE
EEEEEEECCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA