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The map label for this gene is rimM

Identifier: 15645763

GI number: 15645763

Start: 1212299

End: 1212853

Strand: Reverse

Name: rimM

Synonym: HP1149

Alternate gene names: 15645763

Gene position: 1212853-1212299 (Counterclockwise)

Preceding gene: 15645764

Following gene: 15645762

Centisome position: 72.72

GC content: 37.48

Gene sequence:

>555_bases
ATGGTTTCTATGCTTTTAGTGGGCAGAATTGGTAAAAGCGTGGGGCTTAATGGGGGGTTAAGGCTTCATTTAGAGAGCGA
TTTTCCGGAGTGCTTAAAAAAAGGCGTTAAGGTGAGTGTCGCTCCCTTGAACGCTTTCTCTTGCGTTTCTTCTTTTAAAG
AATATATAATCCATTCTTATGAACATGCTAAAAACCTGTTGTTTTTAGAAACGATCCAAACGCCTGAAAAGGCTAAAGAG
CTGACTAATTTAGGGCTTTTTATGAGCGAAGCAGAGAGCAAGAAACTCTGTGTTTTAAAAGAGGGGGAGTTTTTTTATTG
CGATTTAGTAGGGCTTAGCGTGGTGGAAGAAAACGAGATTCTAGGAAAAGTCATAGAAATCCAAAGGATTTCTCAAACAG
ATTATTTTCTGGTTGAAACCACGCTGAACTTGGTTGAAAAAGGTTTGGCTAAGATTTTTTTAATCCCTTATAGGGATTTT
TATATCCAAGAAATCCTTTTGCAAGACAAAAAAATAACCACCCATAACGCTAAAACGCTTTTAGAGAATAGTTGA

Upstream 100 bases:

>100_bases
TGGTGTGAAAGCCAAAGACGGGTTTTCTTATAAAATCGTTGTTTTTGCTAGTAAAAACGGCGATAAAAATCCCCATGTTT
TAGGCGATCAAACGCCTTGA

Downstream 100 bases:

>100_bases
GTGAAATTCAGCGTTTTAACCCTTTTCCCGCAACTCGTATGGCCTTATTTTGAAGATTCTATTTTAAAAAGAGCGTTAGA
AAAAAATCTTTTTGAATTGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKE
LTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDF
YIQEILLQDKKITTHNAKTLLENS

Sequences:

>Translated_184_residues
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKE
LTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDF
YIQEILLQDKKITTHNAKTLLENS
>Mature_184_residues
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKE
LTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDF
YIQEILLQDKKITTHNAKTLLENS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20793; Mature: 20793

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSY
CCEEEEEHHCCHHCCCCCCEEEEECCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHH
EHAKNLLFLETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEI
HHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEECCEEECCHHH
LGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTL
HHHHHHHHCCCCCCEEEHHHHHHHHHHHHHEEEEECCHHHHHHHHHHCCCCCCCCCHHHH
LENS
CCCC
>Mature Secondary Structure
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSY
CCEEEEEHHCCHHCCCCCCEEEEECCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHH
EHAKNLLFLETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEI
HHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEECCEEECCHHH
LGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTL
HHHHHHHHCCCCCCEEEHHHHHHHHHHHHHEEEEECCHHHHHHHHHHCCCCCCCCCHHHH
LENS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA