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The map label for this gene is rbfA

Identifier: 15645661

GI number: 15645661

Start: 1109612

End: 1109947

Strand: Reverse

Name: rbfA

Synonym: HP1047

Alternate gene names: 15645661

Gene position: 1109947-1109612 (Counterclockwise)

Preceding gene: 15645662

Following gene: 15645660

Centisome position: 66.55

GC content: 38.99

Gene sequence:

>336_bases
ATGAACGCTCATAAAGAACGCTTAGAATCCAATCTTTTAGAATTACTGCAAGAGGCTTTAGCGAGCTTGAACGACAGCGA
GTTGAATTCTTTAAGCGTTACTAAAGTGGAATGCTCTAAAGGGAAGCACCACGCTTATGTGTTTGTGCTTTCATCAGATC
ATAAAATCCTTTCTAAATTGAAAAAAGCTGAGGGTCTTATCAGGCAGTTTGTTTTGCAGGCGAGCGGGTGGTTTAAATGC
CCAAAACTCAGTTTTGTTTCAGACAATAGCTTAGAAAAGCAGCTCCGATTAGACGCCATATTTAATGAAATCGCTAAAGG
GAAAGATAATGACTAA

Upstream 100 bases:

>100_bases
AGGGTTATGAGTGCGGGATCATGCTAGACAATTATAATGAGATTAAAGTGGGTGATGTGTTTGAAACCTATAAAGAAATC
CATAAAAAAAGAACTCTCTA

Downstream 100 bases:

>100_bases
AAAAATAGAAGAGAAAATAGGGGGCGTGATTGAAAGTTTGGGTTATTTGCTTTATGATGTGAGTTTGGTTAAAGAAAATG
AACAGCATGTTTTAAGGGTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVSDNSLEKQLRLDAIFNEIAKGKDND

Sequences:

>Translated_111_residues
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVSDNSLEKQLRLDAIFNEIAKGKDND
>Mature_111_residues
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVSDNSLEKQLRLDAIFNEIAKGKDND

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 12499; Mature: 12499

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQLRLDAIFNEIAKGKDND
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQLRLDAIFNEIAKGKDND
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA