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Identifier: 15645446

GI number: 15645446

Start: 879390

End: 879638

Strand: Reverse

Name: Not Available

Synonym: HP0827

Alternate gene names: 15645446

Gene position: 879638-879390 (Counterclockwise)

Preceding gene: 15645447

Following gene: 15645431

Centisome position: 52.74

GC content: 37.75

Gene sequence:

>249_bases
TTGAGAAACATTTATGTAGGGAATTTGGTTTATAGCGCTACCAGTGAGCAAGTCAAGGAGCTTTTCAGTCAATTTGGCAA
AGTTTTTAATGTCAAGCTGATTTATGACAGAGAAACGAAGAAACCTAAAGGTTTTGGCTTTGTAGAAATGCAAGAAGAGA
GCGTTAGTGAAGCGATCGCTAAATTAGACAATACGGATTTTATGGGCAGAACGATTAGGGTAACCGAAGCTAATCCTAAA
AAGTCTTAG

Upstream 100 bases:

>100_bases
TTCTGTTTTGGATGTGTTTGGGTTTTAGAAGTGTTACTTTTTTATAACTTTTTCATATTCTTATGGGTATGTTGTCATTT
TTTTACCGGAGAATTTTATC

Downstream 100 bases:

>100_bases
TAACATTAGAAAATAATTTTCTAATGCGCTTCATTCTCTTAGTGCGTTTTATTTAGATTGCACATAGAGGCTAAAAGGGG
TTAAAACCCTTTTAAAATCC

Product: ss-DNA binding protein 12RNP2 precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEANPK
KS

Sequences:

>Translated_82_residues
MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEANPK
KS
>Mature_82_residues
MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEANPK
KS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=83, Percent_Identity=45.7831325301205, Blast_Score=86, Evalue=5e-18,
Organism=Homo sapiens, GI4557493, Length=83, Percent_Identity=45.7831325301205, Blast_Score=86, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=44.7368421052632, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=38.961038961039, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=40.7894736842105, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=40, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322191, Length=74, Percent_Identity=33.7837837837838, Blast_Score=60, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=46.9879518072289, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9386; Mature: 9386

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIA
CCCEEECCEEECCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECHHHHHHHHH
KLDNTDFMGRTIRVTEANPKKS
HCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIA
CCCEEECCEEECCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECHHHHHHHHH
KLDNTDFMGRTIRVTEANPKKS
HCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]