| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645276
GI number: 15645276
Start: 698132
End: 698755
Strand: Reverse
Name: Not Available
Synonym: HP0652
Alternate gene names: 15645276
Gene position: 698755-698132 (Counterclockwise)
Preceding gene: 15645277
Following gene: 15645275
Centisome position: 41.9
GC content: 41.67
Gene sequence:
>624_bases GTGCAAAAACTAGCCGTTTTTGATTTTGACTCCACGCTAGTCAATGCTGAGACGATTGAGTCTTTAGCGAGGGCGTGGGG GGTTTTTGATGAAGTGAAAACAATCACTTTGAAAGCTATGAATGGCGAGACAGATTTTCATAAAAGTCTTATTTTAAGGG TTTCCAAACTCAAAAACATGCCCTTAAAACTAGCCAAAGAAGTTTGTGAAAGTCTGCCTTTATTTGAAGGAGCGCTTGAG CTTGTTAGTGCCTTAAAAGAGAAAAATTACAAGGTGGTTTGCTTCAGCGGAGGCTTTGATCTAGCGACCAATCATTACAG GGATTTATTGCATTTAGATGCGGCTTTCAGCAACACGCTGATAGTGGAAAATGACGCCTTAAACGGCTTGGTTACGGGGC ATATGATGTTTTCACACTCTAAGGGCGAAATGCTACTCGTTTTACAACGCTTGTTGAATATCAGCAAAACGAACACTTTA GTCGTGGGCGATGGGGCGAATGACTTGAGCATGTTCAAGCATGCCCACATTAAAATCGCTTTCAACGCTAAAGAGGTTTT AAAACAGCACGCTACGCATTGCATCAATGAGCCTGATTTAGCCCTAATCAAGCCTTTGATTTAA
Upstream 100 bases:
>100_bases AAATTGAGTTGATTGGTAATGAAAACCATGGCTTGTATTTGGCTGATCAGTATGTCAAAGGGATCGCTAAAAGCAGGAAA TCTTAATTTTAGGGTATTGG
Downstream 100 bases:
>100_bases AAAAATTTTTTTGTAAAATACTCCTTTTAAAGGATAACCATGTTCCAACCCCTATTAGACGCCTTTATAGAAAGCGCTTC CATTGAAAAAATGGTCTCTA
Product: phosphoserine phosphatase (serB)
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALE LVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTL VVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDLALIKPLI
Sequences:
>Translated_207_residues MQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALE LVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTL VVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDLALIKPLI >Mature_207_residues MQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALE LVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTL VVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDLALIKPLI
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=191, Percent_Identity=30.8900523560209, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1790849, Length=197, Percent_Identity=36.5482233502538, Blast_Score=119, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6321647, Length=195, Percent_Identity=38.974358974359, Blast_Score=107, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 22991; Mature: 22991
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNM CCCEEEEECCCHHCCHHHHHHHHHHHCCHHHHHEEEEEEECCCCHHHHHHHHHHHHHCCC PLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTL CHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEE IVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIA EEECCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHEEEEEE FNAKEVLKQHATHCINEPDLALIKPLI ECHHHHHHHHHHHCCCCCCHHHHCCCC >Mature Secondary Structure MQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNM CCCEEEEECCCHHCCHHHHHHHHHHHCCHHHHHEEEEEEECCCCHHHHHHHHHHHHHCCC PLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTL CHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEE IVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIA EEECCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHEEEEEE FNAKEVLKQHATHCINEPDLALIKPLI ECHHHHHHHHHHHCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 11342136; 12051918 [H]