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The map label for this gene is traM

Identifier: 16519698

GI number: 16519698

Start: 523964

End: 524287

Strand: Direct

Name: traM

Synonym: NGR_a04080

Alternate gene names: 16519698

Gene position: 523964-524287 (Clockwise)

Preceding gene: 16519705

Following gene: NA

Centisome position: 97.72

GC content: 58.33

Gene sequence:

>324_bases
ATGAACGATATGGGCTCATCCGAGGTGAACGACGAAAACAAGGAGAAAGAAGCGCGCTACAGTGTCATGACCAAGTCAGA
GCTTGAGGCACTGGCAGTTTCCGCGATTCGCGAACACCGCCGGCTCCTCTGGGCCGATCAGGCCGTTTACGAGGAGTGGT
TGCGCGCAAGCGACGATCCGTCGATTTCCGGTCCGGTCCTCCAGACGCTCCAGGATGAGTACGTTGCACGCCAGAAGAGG
TCGGAGGCCCAACAGGAGGAGCTATCGGACATTCTGGACGCGCTTGGCTTTGTGCCCGACGTGCCTTTCGACGATGACAA
CTAG

Upstream 100 bases:

>100_bases
TGCCTTGCCTCAGCCCAGAGAATTTGGCTGTAGCGGCTAGACCGATACAATGCCGACCTTGGGTGCTGGGCAGTGAGGAA
ATCAAATCAGGGAGAAGCGG

Downstream 100 bases:

>100_bases
AACTCAGACCAGGCCGCGATCCTTGGCAATTGCAACAAGTTGCGGCACTGATTCCGCGTCAAGCTTTGCACGTGCTTTAT
CGAGATAGTGCTGCACGGTT

Product: repressor protein TraM of functions required for conjugal transfer of pNGR234a

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNDMGSSEVNDENKEKEARYSVMTKSELEALAVSAIREHRRLLWADQAVYEEWLRASDDPSISGPVLQTLQDEYVARQKR
SEAQQEELSDILDALGFVPDVPFDDDN

Sequences:

>Translated_107_residues
MNDMGSSEVNDENKEKEARYSVMTKSELEALAVSAIREHRRLLWADQAVYEEWLRASDDPSISGPVLQTLQDEYVARQKR
SEAQQEELSDILDALGFVPDVPFDDDN
>Mature_107_residues
MNDMGSSEVNDENKEKEARYSVMTKSELEALAVSAIREHRRLLWADQAVYEEWLRASDDPSISGPVLQTLQDEYVARQKR
SEAQQEELSDILDALGFVPDVPFDDDN

Specific function: Acts to antagonize traR-dependent activation (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid traM

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAM_RHISN (P55408)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443818.1
- PDB:   2Q0O
- PDBsum:   2Q0O
- ProteinModelPortal:   P55408
- SMR:   P55408
- DIP:   DIP-46220N
- GeneID:   962274
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04080
- HOGENOM:   HBG655981
- ProtClustDB:   CLSK782156
- GO:   GO:0006350
- InterPro:   IPR015309

Pfam domain/function: PF09228 Prok-TraM

EC number: NA

Molecular weight: Translated: 12203; Mature: 12203

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMGSSEVNDENKEKEARYSVMTKSELEALAVSAIREHRRLLWADQAVYEEWLRASDDP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SISGPVLQTLQDEYVARQKRSEAQQEELSDILDALGFVPDVPFDDDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNDMGSSEVNDENKEKEARYSVMTKSELEALAVSAIREHRRLLWADQAVYEEWLRASDDP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SISGPVLQTLQDEYVARQKRSEAQQEELSDILDALGFVPDVPFDDDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424