Click here to switch to the map view.

The map label for this gene is 13508227

Identifier: 13508227

GI number: 13508227

Start: 591798

End: 592220

Strand: Direct

Name: 13508227

Synonym: MPN488

Alternate gene names: NA

Gene position: 591798-592220 (Clockwise)

Preceding gene: 13508226

Following gene: 13508230

Centisome position: 72.49

GC content: 39.72

Gene sequence:

>423_bases
ATGGATCGCAAAATAAGGGAGCAAATTATTGCCATTTACAGCAACTTACAACACAAACAGGACTTAACTCAGTTTGCCCA
TTGTTTAACCACTAAGGCTGATGATAACTGTGAGGACTTCTTTAACTTAGGCTTACAGTTTCAAAACAACCAACTAACAG
CACTTGGTTTTAACGGGGAGGGTTGTATTATTTCGACAATTGCTAGTGAACTGACTTTAAGTGCGTTGGAAGGCAAAACA
ATCAAAGAAGCCATTGTCTTGTTAGAACAGTTTATGGAAGCTGTACAAACTGGTAGCTTAAGCACGCCACTACCCCAAGC
TTTACAACTGTTGTGGGACTTTCAGATTGACCAGAAGCGTTTAAACTGCTTACTCCTAACACCACAGAATTTGCTACAGT
GGCTTAAAGATTTTTCGCACTAA

Upstream 100 bases:

>100_bases
TTTCGTTAATGCACTATAACACAGTGAAGGAGTTGCAGTATTTAGCTAAACTCCTAGCAACTGATACCAAGACAATTATT
AAAAACGTAATTAAGTAACT

Downstream 100 bases:

>100_bases
GCGCTAGCGTTTGCCCTAACGCATCATACAAGCGTTTGTCACCCACCAGGATTTGCTGGTGACTACGTTTGTTTTGCACC
TGGTTAGCGCGCACTAAGTC

Product: NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGEGCIISTIASELTLSALEGKT
IKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKRLNCLLLTPQNLLQWLKDFSH

Sequences:

>Translated_140_residues
MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGEGCIISTIASELTLSALEGKT
IKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKRLNCLLLTPQNLLQWLKDFSH
>Mature_140_residues
MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGEGCIISTIASELTLSALEGKT
IKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKRLNCLLLTPQNLLQWLKDFSH

Specific function: Unknown

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y488_MYCPN (P75297)

Other databases:

- EMBL:   U00089
- PIR:   S73680
- RefSeq:   NP_110176.1
- ProteinModelPortal:   P75297
- SMR:   P75297
- GeneID:   877224
- GenomeReviews:   U00089_GR
- KEGG:   mpn:MPN488
- HOGENOM:   HBG130124
- OMA:   DNCEDFF
- ProtClustDB:   CLSK335290
- BioCyc:   MPNE272634:MPN488-MONOMER
- InterPro:   IPR002871

Pfam domain/function: PF01592 NifU_N

EC number: NA

Molecular weight: Translated: 15911; Mature: 15911

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCEEEEEEECCC
GCIISTIASELTLSALEGKTIKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKR
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
LNCLLLTPQNLLQWLKDFSH
CCEEEECHHHHHHHHHHHCC
>Mature Secondary Structure
MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCEEEEEEECCC
GCIISTIASELTLSALEGKTIKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKR
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
LNCLLLTPQNLLQWLKDFSH
CCEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633