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The map label for this gene is ychF [C]

Identifier: 15669522

GI number: 15669522

Start: 1281236

End: 1282417

Strand: Reverse

Name: ychF [C]

Synonym: MJ1332

Alternate gene names: 15669522

Gene position: 1282417-1281236 (Counterclockwise)

Preceding gene: 15669524

Following gene: 15669521

Centisome position: 77.02

GC content: 34.35

Gene sequence:

>1182_bases
TTGGCAATGATTGGTTTAGTAGGGAAACCAAACGTAGGGAAATCAACAATGTTCAATGCTTTAACTGAAAAACCAGCAGA
AATTGGAAATTATCCATTTACAACAATACAACCAAATAAAGGTATCGCTTATATAACAAGCCCCTGTCCTTGTAAGGAAT
TGGGAGTTAAGTGTAATCCAAGAAATTCAAAATGTATAGATGGGATTAGACATATTCCAGTTGAAGTTATAGATGTGGCT
GGTTTAGTCCCAGGAGCACATGAAGGTAGAGGGATGGGAAACAAGTTTTTGGATGATTTAAGGCAAGCAGATGCATTTAT
ATTGGTTGTTGATGCCTCTGGAAAGACAGATGCTGAAGGAAATCCAACAGAAAACTATGACCCAGTTGAGGATGTTAAAT
TCTTATTAAATGAGATAGATATGTGGATTTATAGCATTTTGACGAAAAATTGGGATAAGTTGGCAAGAAGAGCCCAACAA
GAGAAGAACATAGTTAAAGCTTTAAAAGACCAATTAAGTGGATTGAATATAGATGAGGATGACATAAAGATGGCTATTAG
AGATATGGATGAAAGCCCAATTAAATGGACTGAAGAAGATTTGCTAAACTTGGCTAAAAAGCTTAGAAAAATTTCAAAAC
CAATGATTATCGCTGCAAATAAGGCAGACCACCCGGATGCAGAGAAGAATATTGAAAGGCTAAAGAAAGAGTTTAAGGAC
TATATAGTTATTCCAACATCTGCAGAGATAGAGTTAGCTTTAAAAAGAGCTGAAAAGGCTGGAATTATAAAAAGAAAAGA
AAATGACTTTGAGATAATTGATGAAAGCAAAGTGAATGAACAGATGAGGAGAGCTTTTGATTACATAAAGGACTTTTTAA
AGAAGTATGGAGGAACTGGAGTCCAAGAATGCATAAATAAAGCTTATTTTGATTTGTTGGATATGATTGTTGTCTATCCA
GTTGAAGATGAGAACAAATTTTCAGATAAGCAAGGAAATGTATTACCAGATGCATTTTTGGTTAAAAAAGGAAGTACTGC
AAGAGACTTAGCTTATAAGGTGCATACAGAGTTGGGAGAGAAATTTATCTATGCAATAGATGCAAAGAAGAAGATTAGAG
TAGGAGCTGATTACGAATTGAAGCATAATGATATTATTAAAATTGTCTCTGCCGCAAAATAA

Upstream 100 bases:

>100_bases
GACGGCATTCATTTCACCTATTGTGTAATTTTAAATATCATTACTACATAAAGTCATATAAATATTTTAACACCATACTC
AATATTTTTATGGTGAGAAC

Downstream 100 bases:

>100_bases
TTAAATTTTTGGTGGCCTCCATGGCTACAACTTATGAGCTGAGAATTTATGGAAATGTGGAGTGTGCTGAATTTATAGAT
AAAGTTGAGAGTTTAGGAAA

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAMIGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNPRNSKCIDGIRHIPVEVIDVA
GLVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEGNPTENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQQ
EKNIVKALKDQLSGLNIDEDDIKMAIRDMDESPIKWTEEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLKKEFKD
YIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKDFLKKYGGTGVQECINKAYFDLLDMIVVYP
VEDENKFSDKQGNVLPDAFLVKKGSTARDLAYKVHTELGEKFIYAIDAKKKIRVGADYELKHNDIIKIVSAAK

Sequences:

>Translated_393_residues
MAMIGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNPRNSKCIDGIRHIPVEVIDVA
GLVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEGNPTENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQQ
EKNIVKALKDQLSGLNIDEDDIKMAIRDMDESPIKWTEEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLKKEFKD
YIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKDFLKKYGGTGVQECINKAYFDLLDMIVVYP
VEDENKFSDKQGNVLPDAFLVKKGSTARDLAYKVHTELGEKFIYAIDAKKKIRVGADYELKHNDIIKIVSAAK
>Mature_392_residues
AMIGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNPRNSKCIDGIRHIPVEVIDVAG
LVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEGNPTENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQQE
KNIVKALKDQLSGLNIDEDDIKMAIRDMDESPIKWTEEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLKKEFKDY
IVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKDFLKKYGGTGVQECINKAYFDLLDMIVVYPV
EDENKFSDKQGNVLPDAFLVKKGSTARDLAYKVHTELGEKFIYAIDAKKKIRVGADYELKHNDIIKIVSAAK

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain

Homologues:

Organism=Homo sapiens, GI58761500, Length=271, Percent_Identity=30.9963099630996, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI24308117, Length=142, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=8e-13,
Organism=Escherichia coli, GI1787454, Length=108, Percent_Identity=43.5185185185185, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789574, Length=148, Percent_Identity=27.7027027027027, Blast_Score=69, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6321649, Length=401, Percent_Identity=38.4039900249377, Blast_Score=264, Evalue=2e-71,
Organism=Saccharomyces cerevisiae, GI6321773, Length=159, Percent_Identity=33.9622641509434, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6319499, Length=300, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640873, Length=225, Percent_Identity=33.7777777777778, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24640877, Length=225, Percent_Identity=33.7777777777778, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24640875, Length=225, Percent_Identity=33.7777777777778, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI20129375, Length=113, Percent_Identity=32.7433628318584, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): Y1332_METJA (Q58728)

Other databases:

- EMBL:   L77117
- PIR:   C64466
- RefSeq:   NP_248333.1
- ProteinModelPortal:   Q58728
- SMR:   Q58728
- GeneID:   1452234
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1332
- NMPDR:   fig|243232.1.peg.1370
- TIGR:   MJ1332
- HOGENOM:   HBG586249
- OMA:   IVVYPVE
- ProtClustDB:   PRK09602
- BioCyc:   MJAN243232:MJ_1332-MONOMER
- GO:   GO:0005622
- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676
- Gene3D:   G3DSA:3.10.20.30
- PRINTS:   PR00326

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS; SSF81271 TGS-like

EC number: NA

Molecular weight: Translated: 44268; Mature: 44136

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMIGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNP
CCEEECCCCCCCCHHHHHHHHHHCCHHHCCCCCEEECCCCCEEEEECCCCHHHCCCEECC
RNSKCIDGIRHIPVEVIDVAGLVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEG
CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
NPTENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQQEKNIVKALKDQLSGLNIDED
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DIKMAIRDMDESPIKWTEEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLKKEFKD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
YIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKDFLKKYGGTG
EEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
VQECINKAYFDLLDMIVVYPVEDENKFSDKQGNVLPDAFLVKKGSTARDLAYKVHTELGE
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHCC
KFIYAIDAKKKIRVGADYELKHNDIIKIVSAAK
CEEEEECCCCEEEECCCCEECCCHHHHHHHCCC
>Mature Secondary Structure 
AMIGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNP
CEEECCCCCCCCHHHHHHHHHHCCHHHCCCCCEEECCCCCEEEEECCCCHHHCCCEECC
RNSKCIDGIRHIPVEVIDVAGLVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEG
CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
NPTENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQQEKNIVKALKDQLSGLNIDED
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DIKMAIRDMDESPIKWTEEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLKKEFKD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
YIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKDFLKKYGGTG
EEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
VQECINKAYFDLLDMIVVYPVEDENKFSDKQGNVLPDAFLVKKGSTARDLAYKVHTELGE
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHCC
KFIYAIDAKKKIRVGADYELKHNDIIKIVSAAK
CEEEEECCCCEEEECCCCEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087