Click here to switch to the map view.

The map label for this gene is rps28e [H]

Identifier: 15669388

GI number: 15669388

Start: 1146547

End: 1146783

Strand: Reverse

Name: rps28e [H]

Synonym: MJ1202

Alternate gene names: 15669388

Gene position: 1146783-1146547 (Counterclockwise)

Preceding gene: 15669389

Following gene: 15669387

Centisome position: 68.88

GC content: 35.44

Gene sequence:

>237_bases
GTGATGAGGATGGAAGATGAATTTGTTTATAAGGAAGCAGTAGCTGCTGAAGTTATTGAAGTCATTGGTAGAACAGGGGT
TACTGGAGGAATTATACAAGTTAGATGTAAAATCTTAGGTGGAAAAGATACTGGAAGAGTTTTAGTTAGAAACGTTAAAG
GTCCAGTTAAAGTTGGAGACATTATTATGTTAAGAGAAACAGAGAGAGAAGCAAGACCATTAGACAGAAGAAGATAA

Upstream 100 bases:

>100_bases
GCTATTTAACCATCAATCAATAGTATATAGTTATTATTATATAAATTATGAAACACTACTACTAACTTTTTTATAAATTT
TAAACCTTCATTAATATTAG

Downstream 100 bases:

>100_bases
ATAATTTAATCTTAAATTATTTTAAAATCACTGAAACACTATTAAAGGGGGATAGCTATGCCAGAATGGAGAACATGCAG
CTTTTGTGGTTATGAAATTG

Product: 30S ribosomal protein S28e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MMRMEDEFVYKEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETEREARPLDRRR

Sequences:

>Translated_78_residues
MMRMEDEFVYKEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETEREARPLDRRR
>Mature_78_residues
MMRMEDEFVYKEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETEREARPLDRRR

Specific function: Unknown

COG id: COG2053

COG function: function code J; Ribosomal protein S28E/S33

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S28e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323294, Length=59, Percent_Identity=59.3220338983051, Blast_Score=66, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324741, Length=59, Percent_Identity=59.3220338983051, Blast_Score=65, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24651257, Length=59, Percent_Identity=59.3220338983051, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000289
- InterPro:   IPR022836
- ProDom:   PD005541 [H]

Pfam domain/function: PF01200 Ribosomal_S28e [H]

EC number: NA

Molecular weight: Translated: 8783; Mature: 8783

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00961 RIBOSOMAL_S28E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRMEDEFVYKEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCC
IIMLRETEREARPLDRRR
EEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MMRMEDEFVYKEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCC
IIMLRETEREARPLDRRR
EEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]