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The map label for this gene is trmE [C]

Identifier: 15669110

GI number: 15669110

Start: 851000

End: 851557

Strand: Reverse

Name: trmE [C]

Synonym: MJ0920

Alternate gene names: 15669110

Gene position: 851557-851000 (Counterclockwise)

Preceding gene: 15669111

Following gene: 15669109

Centisome position: 51.15

GC content: 31.18

Gene sequence:

>558_bases
ATGCAAGATAAAGAGTTTAAAATAGCCATTATTGGCCCAGAAAATGCTGGAAAGTCATCAATAATGAACGCATTGTTTGG
AAAATATGTTTCATTAGTGTCTGAGGTAGGTGGAACTACAAAAATGCCCATAAAAAGATACTGGGGAAAGTTGAAGATTG
GGAGAATTAAGGAGGAGCCAGAATTTGTGAATTTAGTGTTTGTTGATTTGGGAGGATTATATACAACAACTGACAAACAA
TCCCCAATTATGACACCAAAAGTTTTAGAAAAGACGTTTGAGGAGATTAATGATTCAGATATGATTATACATGTAATTGA
TGGCAGTGTTGGATTATTAAGGAGCTTTGAGAGACTCCACCACTTGTTAAAATTCAGATACCAAAAACCTATTATAGTGG
TAATCAATAAATGTGATTTATTAAATGATAGTGATAAAGAACATTTAAAGAATTATGTTGAAAGAAGAATAAAAAATACT
CCAATATTTGTATCAGCAAAAACTTTTGAAGGAATCCCTGAATTGTTGGATATAATTATTAAGTATTTGAAAAGGTGA

Upstream 100 bases:

>100_bases
AGAAGGAGGGATAATAGGGGCTGTTGCTGCTTTAGGTTTGGCTGAGCATCACTCATTAGCTCCAAAGTTGTGTGAAGACA
TTAAGCTATAATGTGAGACT

Downstream 100 bases:

>100_bases
TGCAATGTTAGAAAAGCTAAAGAAACTTTTGAGTAAAAAAGGAGATAATTTCTCAACCCCCGCACCAGTATCTGTAGATG
ACTACTTAGAAGAAATTGAG

Product: GTP-binding protein homologue YphC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQDKEFKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNLVFVDLGGLYTTTDKQ
SPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLHHLLKFRYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNT
PIFVSAKTFEGIPELLDIIIKYLKR

Sequences:

>Translated_185_residues
MQDKEFKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNLVFVDLGGLYTTTDKQ
SPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLHHLLKFRYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNT
PIFVSAKTFEGIPELLDIIIKYLKR
>Mature_185_residues
MQDKEFKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNLVFVDLGGLYTTTDKQ
SPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLHHLLKFRYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNT
PIFVSAKTFEGIPELLDIIIKYLKR

Specific function: Exhibits A Very High Intrinsic Gtpase Hydrolysis Rate. Involved In The Biosynthesis Of The Hypermodified Nucleoside 5- Methylaminomethyl-2-Thiouridine, Which Is Found In The Wobble Position Of Some Trnas. [C]

COG id: COG1100

COG function: function code R; GTPase SAR1 and related small G proteins

Gene ontology:

Cell location: Cytoplasmic; may also be associated with the inner membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y920_METJA (Q58330)

Other databases:

- EMBL:   L77117
- PIR:   H64414
- RefSeq:   NP_247915.1
- ProteinModelPortal:   Q58330
- SMR:   Q58330
- GeneID:   1451809
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0920
- NMPDR:   fig|243232.1.peg.952
- TIGR:   MJ0920
- HOGENOM:   HBG541105
- OMA:   SEVGGTT
- ProtClustDB:   CLSK865328
- BioCyc:   MJAN243232:MJ_0920-MONOMER
- GO:   GO:0005622
- InterPro:   IPR002917
- InterPro:   IPR001806
- InterPro:   IPR005225
- PRINTS:   PR00449
- TIGRFAMs:   TIGR00231

Pfam domain/function: PF01926 MMR_HSR1

EC number: NA

Molecular weight: Translated: 21241; Mature: 21241

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDKEFKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEP
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCCCC
EFVNLVFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLH
CEEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
HLLKFRYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNTPIFVSAKTFEGIPELLDIII
HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHH
KYLKR
HHHCC
>Mature Secondary Structure
MQDKEFKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEP
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCCCC
EFVNLVFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLH
CEEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
HLLKFRYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNTPIFVSAKTFEGIPELLDIII
HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHH
KYLKR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087