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The map label for this gene is tfe [H]

Identifier: 15668958

GI number: 15668958

Start: 698473

End: 699048

Strand: Direct

Name: tfe [H]

Synonym: MJ0777

Alternate gene names: 15668958

Gene position: 698473-699048 (Clockwise)

Preceding gene: 15668957

Following gene: 15668959

Centisome position: 41.95

GC content: 31.42

Gene sequence:

>576_bases
ATGAGGAGTGTGCAGAGTATGAGAAAAGAAAAGAAGATAGAGAGAATATATGAGATGCTAAACGACCCTTTGGTTCAGGA
AGTTCTTTTTAATATATTTGAAGGAGATGAGAAAGGATTTGAAGTTATTGATGTTCTTTTAGAGAAGGGCGAGACAACAG
AAGAAGAGATTGCTAAAGAACTTGGAGTAAAACTTAATGTAGTTAGAAAACTGCTTTATAAGTTGTATGATGCAAGATTA
GTTGATTATAAGAGATGGAAAGATGAAGATACCAATTGGTATTCCTACACATGGTTACCAACACTTGAAAAACTTCCTTA
TGTTGTAAAAAAGAAAATAAATGAGTTAATTAAAGACCTTGAGAAGAAGTTGGAGTTTGAGAAAAACAACATGTTTTTCT
TCTGTCCAAATTGTAATGTGAGATTTACATTTGAAGAGGCAATGGATTATGGCTTTTCGTGTCCAGGTTGTGGAAACATG
TTGCAGGAATTTGACAATAGTGAATTAATTAAAGATTTAGAGGAGCAAATAAAATTTTTAAAGGAAGAATTAAAGAACAA
TCCTTTTTTGAAATAA

Upstream 100 bases:

>100_bases
ATACATGATATTCCAAAGAAAAATGCAGTTATAGAGAAAGGAGAGCCTATAGCTACAGTAATTGCAAAAGAAAACATTAA
ATCAATAATAAACAGTGTTT

Downstream 100 bases:

>100_bases
TGTTTTTATGGTGATTATATAAAAATTCCCGTCTGCGGAGTGGGATTATGGAATTTGAAAAAGCCCTTTCTATTTTAAAA
AACTTATGCTCTGAGAATGT

Product: transcription initiation factor E subunit alpha

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MRSVQSMRKEKKIERIYEMLNDPLVQEVLFNIFEGDEKGFEVIDVLLEKGETTEEEIAKELGVKLNVVRKLLYKLYDARL
VDYKRWKDEDTNWYSYTWLPTLEKLPYVVKKKINELIKDLEKKLEFEKNNMFFFCPNCNVRFTFEEAMDYGFSCPGCGNM
LQEFDNSELIKDLEEQIKFLKEELKNNPFLK

Sequences:

>Translated_191_residues
MRSVQSMRKEKKIERIYEMLNDPLVQEVLFNIFEGDEKGFEVIDVLLEKGETTEEEIAKELGVKLNVVRKLLYKLYDARL
VDYKRWKDEDTNWYSYTWLPTLEKLPYVVKKKINELIKDLEKKLEFEKNNMFFFCPNCNVRFTFEEAMDYGFSCPGCGNM
LQEFDNSELIKDLEEQIKFLKEELKNNPFLK
>Mature_191_residues
MRSVQSMRKEKKIERIYEMLNDPLVQEVLFNIFEGDEKGFEVIDVLLEKGETTEEEIAKELGVKLNVVRKLLYKLYDARL
VDYKRWKDEDTNWYSYTWLPTLEKLPYVVKKKINELIKDLEKKLEFEKNNMFFFCPNCNVRFTFEEAMDYGFSCPGCGNM
LQEFDNSELIKDLEEQIKFLKEELKNNPFLK

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR002853
- InterPro:   IPR011991
- InterPro:   IPR013137 [H]

Pfam domain/function: PF08271 TFIIB_Zn_Ribbon [H]

EC number: NA

Molecular weight: Translated: 22961; Mature: 22961

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVQSMRKEKKIERIYEMLNDPLVQEVLFNIFEGDEKGFEVIDVLLEKGETTEEEIAKE
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
LGVKLNVVRKLLYKLYDARLVDYKRWKDEDTNWYSYTWLPTLEKLPYVVKKKINELIKDL
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCHHHHHHHHHHHHHHH
EKKLEFEKNNMFFFCPNCNVRFTFEEAMDYGFSCPGCGNMLQEFDNSELIKDLEEQIKFL
HHHHHHCCCCEEEECCCCCEEEEHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
KEELKNNPFLK
HHHHCCCCCCC
>Mature Secondary Structure
MRSVQSMRKEKKIERIYEMLNDPLVQEVLFNIFEGDEKGFEVIDVLLEKGETTEEEIAKE
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
LGVKLNVVRKLLYKLYDARLVDYKRWKDEDTNWYSYTWLPTLEKLPYVVKKKINELIKDL
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCHHHHHHHHHHHHHHH
EKKLEFEKNNMFFFCPNCNVRFTFEEAMDYGFSCPGCGNMLQEFDNSELIKDLEEQIKFL
HHHHHHCCCCEEEECCCCCEEEEHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
KEELKNNPFLK
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]