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The map label for this gene is ybiR [C]

Identifier: 15668632

GI number: 15668632

Start: 406885

End: 407943

Strand: Direct

Name: ybiR [C]

Synonym: MJ0456

Alternate gene names: 15668632

Gene position: 406885-407943 (Clockwise)

Preceding gene: 15668627

Following gene: 15668633

Centisome position: 24.44

GC content: 26.53

Gene sequence:

>1059_bases
ATGAAGATTGATACATTTATATTTTTGATGTTTATTAGCATTGGGATTTTGCTTTTGCTATTGAATATAATAAATCCAAT
GGAGGTATTTCATATTGTTGAATGGAAAACAATATTTTCCTTGTTTTATTTAATGGTTATCATAAACATTATGAGAGATA
CAAAGTTTTTAGACTATATTTCTTTAAAAATCTTAAAGAAATCTAAGAGGATTTTTATTGCTTTGATATTCTTAACTCTG
TTTTTATCTTCTTTAATAACAAATGATGTCTCTTTATTTGTCATCATCCCTTTAACTCTAATAATTCACAGATACACAAA
TATGCCTTTTAAGGATTTAGAAAAGCTCATTATCTTTGAGGGTGTCTCTGCAAATATTGGAAGTGGCTTAACCCCTATAG
GAAATCCTCAAAATCTATTTTTATTTCATTTCTATAATATTGGAACTTTAGAGTTTATAATTAATATGATTCCCTTTGAA
ATTTTTGGAATTTTGGCTATTTTACCATTCTTAGAATTTAAAAAGTATGATACTAAGATAAATATTGACATTAAGTTTAA
AAAAGAGTGGATTTTTTATATATTATCTTTTATTTTGGTTTTGTTATGTGTTTTTGGATATTTGAATTTTATATATATTC
TTCCTTTAATACTGGCAATTTTAATGTATAAGAGGGTTAAAGTGGATTATCTGTTTTTACTAACTTTCATCTTCCTATTT
GTTGATATTGAGGGACTAAAGAGGATTGGAATTATTAATATATTTTCAATAAAATGTGGTAATGTTATGTTAATGATTTA
TGCCTCCTTACTATCTCAAATAATCTCAAACGTGCCCGCTACAGTGTTGCTATCTCATTTATACAAAAACTGGCTACCAA
TAGCTTATGGTGTAAATATCGGAGGTAACGGAACTTTAATTGCTTCTTTTGCCAATTTAATAACTTTAAGATTATCCAAC
GGAAATGTGAGAGTGGGAAGGTTTTTATTAATTGGAGGAATAATTTATATAATGCACTTGATTGTATTGGTAGCTTATGC
TAAAATATTTTGGGTTTAG

Upstream 100 bases:

>100_bases
TTATTTTTTGTGTTATATCCTTTTTGCAGTCCTTTCCAGTATAGCAAAGTTTTTTATTGCATTGGGAGCATTTCATAATT
AACCACCATAGAGGGAAAGT

Downstream 100 bases:

>100_bases
AGGGAGATTATGGATTTAATAGAAGAAGCTATAAAGTTAGAGAGTGATTTAATAAGAATAAATTCAGTAAATCCTTCATT
TGGTGGAAAAGGAGAAAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKIDTFIFLMFISIGILLLLLNIINPMEVFHIVEWKTIFSLFYLMVIINIMRDTKFLDYISLKILKKSKRIFIALIFLTL
FLSSLITNDVSLFVIIPLTLIIHRYTNMPFKDLEKLIIFEGVSANIGSGLTPIGNPQNLFLFHFYNIGTLEFIINMIPFE
IFGILAILPFLEFKKYDTKINIDIKFKKEWIFYILSFILVLLCVFGYLNFIYILPLILAILMYKRVKVDYLFLLTFIFLF
VDIEGLKRIGIINIFSIKCGNVMLMIYASLLSQIISNVPATVLLSHLYKNWLPIAYGVNIGGNGTLIASFANLITLRLSN
GNVRVGRFLLIGGIIYIMHLIVLVAYAKIFWV

Sequences:

>Translated_352_residues
MKIDTFIFLMFISIGILLLLLNIINPMEVFHIVEWKTIFSLFYLMVIINIMRDTKFLDYISLKILKKSKRIFIALIFLTL
FLSSLITNDVSLFVIIPLTLIIHRYTNMPFKDLEKLIIFEGVSANIGSGLTPIGNPQNLFLFHFYNIGTLEFIINMIPFE
IFGILAILPFLEFKKYDTKINIDIKFKKEWIFYILSFILVLLCVFGYLNFIYILPLILAILMYKRVKVDYLFLLTFIFLF
VDIEGLKRIGIINIFSIKCGNVMLMIYASLLSQIISNVPATVLLSHLYKNWLPIAYGVNIGGNGTLIASFANLITLRLSN
GNVRVGRFLLIGGIIYIMHLIVLVAYAKIFWV
>Mature_352_residues
MKIDTFIFLMFISIGILLLLLNIINPMEVFHIVEWKTIFSLFYLMVIINIMRDTKFLDYISLKILKKSKRIFIALIFLTL
FLSSLITNDVSLFVIIPLTLIIHRYTNMPFKDLEKLIIFEGVSANIGSGLTPIGNPQNLFLFHFYNIGTLEFIINMIPFE
IFGILAILPFLEFKKYDTKINIDIKFKKEWIFYILSFILVLLCVFGYLNFIYILPLILAILMYKRVKVDYLFLLTFIFLF
VDIEGLKRIGIINIFSIKCGNVMLMIYASLLSQIISNVPATVLLSHLYKNWLPIAYGVNIGGNGTLIASFANLITLRLSN
GNVRVGRFLLIGGIIYIMHLIVLVAYAKIFWV

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family

Homologues:

Organism=Escherichia coli, GI1787039, Length=337, Percent_Identity=30.5637982195846, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y456_METJA (Q57898)

Other databases:

- EMBL:   L77117
- PIR:   H64356
- RefSeq:   NP_247430.1
- ProteinModelPortal:   Q57898
- GeneID:   1451317
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0456
- NMPDR:   fig|243232.1.peg.467
- TIGR:   MJ0456
- OMA:   NISHSDA
- ProtClustDB:   CLSK2517613
- BioCyc:   MJAN243232:MJ_0456-MONOMER
- InterPro:   IPR004680

Pfam domain/function: PF03600 CitMHS

EC number: NA

Molecular weight: Translated: 40636; Mature: 40636

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc895694)-; HASH(0xcbfea84)-; HASH(0xc1b5d18)-; HASH(0xb09eb0c)-; HASH(0xc8c17e4)-; HASH(0xc636534)-; HASH(0xba7a600)-; HASH(0xb366128)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDTFIFLMFISIGILLLLLNIINPMEVFHIVEWKTIFSLFYLMVIINIMRDTKFLDYI
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLKILKKSKRIFIALIFLTLFLSSLITNDVSLFVIIPLTLIIHRYTNMPFKDLEKLIIFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
GVSANIGSGLTPIGNPQNLFLFHFYNIGTLEFIINMIPFEIFGILAILPFLEFKKYDTKI
CCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
NIDIKFKKEWIFYILSFILVLLCVFGYLNFIYILPLILAILMYKRVKVDYLFLLTFIFLF
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDIEGLKRIGIINIFSIKCGNVMLMIYASLLSQIISNVPATVLLSHLYKNWLPIAYGVNI
HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEE
GGNGTLIASFANLITLRLSNGNVRVGRFLLIGGIIYIMHLIVLVAYAKIFWV
CCCCHHHHHHHHHHEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MKIDTFIFLMFISIGILLLLLNIINPMEVFHIVEWKTIFSLFYLMVIINIMRDTKFLDYI
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLKILKKSKRIFIALIFLTLFLSSLITNDVSLFVIIPLTLIIHRYTNMPFKDLEKLIIFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
GVSANIGSGLTPIGNPQNLFLFHFYNIGTLEFIINMIPFEIFGILAILPFLEFKKYDTKI
CCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
NIDIKFKKEWIFYILSFILVLLCVFGYLNFIYILPLILAILMYKRVKVDYLFLLTFIFLF
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDIEGLKRIGIINIFSIKCGNVMLMIYASLLSQIISNVPATVLLSHLYKNWLPIAYGVNI
HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEE
GGNGTLIASFANLITLRLSNGNVRVGRFLLIGGIIYIMHLIVLVAYAKIFWV
CCCCHHHHHHHHHHEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087