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The map label for this gene is rpoL

Identifier: 15668563

GI number: 15668563

Start: 352843

End: 353142

Strand: Reverse

Name: rpoL

Synonym: MJ0387

Alternate gene names: 15668563

Gene position: 353142-352843 (Counterclockwise)

Preceding gene: 15668564

Following gene: 15668562

Centisome position: 21.21

GC content: 31.67

Gene sequence:

>300_bases
ATGGAGATAAAGATATTGGAGAGGAAAGATAATTTGGTAGAGATTGAACTAATTAATGAAGACCATTCATTACCAAATCT
ATTAAAAGACATTTTATTAACAAAAGAAGGAGTTAAGATGGCATCCTACTCTATAGACCATCCATTATTACATCCAGAAA
CTGGAAGGTATATATCAAACCCAAAGATAACTATAATTACTGAAGAGGGAACAGACCCTTTAGAAGTTTTAAAGGAAGGG
TTGAGAGATATTATTAAAATGTGCGATACTTTACTGGACGAACTAAAGGAAAAGAAGTAA

Upstream 100 bases:

>100_bases
GAGGAAGCTTTAGAAAAAGGATTCTTTAGAGAGGAAGAAGGTAGAATAGTTTTAAATAAGGATATAAACTTGGCTAAAAA
AGCTTTATTGGAGGGAGAAG

Downstream 100 bases:

>100_bases
TTTGAATAGTATCACGTTAAAAGATTTTATATTTGGAATTAATTTCTTTAACTCTTTTCTTAACTTATTTAATAGAAGTT
TAAATTTGATTTCTAAGGGT

Product: DNA-directed RNA polymerase subunit L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MEIKILERKDNLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPLEVLKEG
LRDIIKMCDTLLDELKEKK

Sequences:

>Translated_99_residues
MEIKILERKDNLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPLEVLKEG
LRDIIKMCDTLLDELKEKK
>Mature_99_residues
MEIKILERKDNLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPLEVLKEG
LRDIIKMCDTLLDELKEKK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1761

COG function: function code K; DNA-directed RNA polymerase, subunit L

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOL_METJA (Q57832)

Other databases:

- EMBL:   L77117
- PIR:   C64348
- RefSeq:   NP_247361.1
- ProteinModelPortal:   Q57832
- SMR:   Q57832
- IntAct:   Q57832
- GeneID:   1451244
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0387
- NMPDR:   fig|243232.1.peg.398
- TIGR:   MJ0387
- HOGENOM:   HBG726964
- OMA:   ASYGVEH
- ProtClustDB:   PRK01146
- BioCyc:   MJAN243232:MJ_0387-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00261
- InterPro:   IPR009025
- InterPro:   IPR008193
- InterPro:   IPR022905

Pfam domain/function: SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 11392; Mature: 11392

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01154 RNA_POL_L_13KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKILERKDNLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISN
CCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCEECC
PKITIITEEGTDPLEVLKEGLRDIIKMCDTLLDELKEKK
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIKILERKDNLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISN
CCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCEECC
PKITIITEEGTDPLEVLKEGLRDIIKMCDTLLDELKEKK
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087