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The map label for this gene is opa [H]

Identifier: 30995429

GI number: 30995429

Start: 1244067

End: 1244552

Strand: Direct

Name: opa [H]

Synonym: HI1174

Alternate gene names: 30995429

Gene position: 1244067-1244552 (Clockwise)

Preceding gene: 16273097

Following gene: 16273114

Centisome position: 67.98

GC content: 38.48

Gene sequence:

>486_bases
TTGGGTGCATTTGCCTTTGCTTCTGTTACAAATGCGAATATTTATGCTGAGGGCGATATCGGTTTATCTCAAACTAAAGC
AAACGGTAGTAACAATACAAGAGTTGGACCTCGCGTATCCGTGGGTTATAAAGTAGGAAATACACGTGTTGCGGGTGATT
ATACTCATCATGGAAAAGTTGATGGCACAAAAATTCAAGGTTTAGGTGCATCAGTATTATATGATTTTGACACGAATTCT
AAAGTGCAACCTTATGTTGGTGCTCGTGTAGCGACTAATCAATTTAAATACACCAATCGCGCAGAACAAAAGTTTAAAAG
TTCTTCTGATATTAAGCTCGGATATGGGGTTGTAGCAGGTGCAAAATATAAGTTAGATGGCAACTGGTACGCAAATGGTG
GAGTTGAGTACAATCGTTTAGGTAATTTTGATAGTACCAAAGTTAATAACTATGGTGCAAAAGTTGGTGTGGGGTACGGA
TTCTAA

Upstream 100 bases:

>100_bases
TTTTGTCGATGATGAAGAATAATTTTTGTGATATATTTTTCCAATTTATTCAATAAATAAAGGAGTTATCCAATGAAAAA
ATCTTTATTAGCAGTTATTG

Downstream 100 bases:

>100_bases
TTTTTAGAATATAAAAATCTTTTTTATAAAACACTTTAATTTAACGGTGATCGTTTAAAACAATCACCGTTATTTATTTT
GGGATTATTTCAATACGCTA

Product: opacity protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MGAFAFASVTNANIYAEGDIGLSQTKANGSNNTRVGPRVSVGYKVGNTRVAGDYTHHGKVDGTKIQGLGASVLYDFDTNS
KVQPYVGARVATNQFKYTNRAEQKFKSSSDIKLGYGVVAGAKYKLDGNWYANGGVEYNRLGNFDSTKVNNYGAKVGVGYG
F

Sequences:

>Translated_161_residues
MGAFAFASVTNANIYAEGDIGLSQTKANGSNNTRVGPRVSVGYKVGNTRVAGDYTHHGKVDGTKIQGLGASVLYDFDTNS
KVQPYVGARVATNQFKYTNRAEQKFKSSSDIKLGYGVVAGAKYKLDGNWYANGGVEYNRLGNFDSTKVNNYGAKVGVGYG
F
>Mature_160_residues
GAFAFASVTNANIYAEGDIGLSQTKANGSNNTRVGPRVSVGYKVGNTRVAGDYTHHGKVDGTKIQGLGASVLYDFDTNSK
VQPYVGARVATNQFKYTNRAEQKFKSSSDIKLGYGVVAGAKYKLDGNWYANGGVEYNRLGNFDSTKVNNYGAKVGVGYGF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the opacity porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR003394 [H]

Pfam domain/function: PF02462 Opacity [H]

EC number: NA

Molecular weight: Translated: 17190; Mature: 17059

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAFAFASVTNANIYAEGDIGLSQTKANGSNNTRVGPRVSVGYKVGNTRVAGDYTHHGKV
CCCEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCC
DGTKIQGLGASVLYDFDTNSKVQPYVGARVATNQFKYTNRAEQKFKSSSDIKLGYGVVAG
CCEEEECCCEEEEEEECCCCCCCCEECCEEECCEEECCCHHHHHHCCCCCEEEEEEEEEC
AKYKLDGNWYANGGVEYNRLGNFDSTKVNNYGAKVGVGYGF
EEEEECCCEEECCCEEEEECCCCCCCEECCCCCEEEECCCC
>Mature Secondary Structure 
GAFAFASVTNANIYAEGDIGLSQTKANGSNNTRVGPRVSVGYKVGNTRVAGDYTHHGKV
CCEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCC
DGTKIQGLGASVLYDFDTNSKVQPYVGARVATNQFKYTNRAEQKFKSSSDIKLGYGVVAG
CCEEEECCCEEEEEEECCCCCCCCEECCEEECCEEECCCHHHHHHCCCCCEEEEEEEEEC
AKYKLDGNWYANGGVEYNRLGNFDSTKVNNYGAKVGVGYGF
EEEEECCCEEECCCEEEEECCCCCCCEECCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]