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The map label for this gene is ndpA [C]

Identifier: 30995406

GI number: 30995406

Start: 888351

End: 889367

Strand: Reverse

Name: ndpA [C]

Synonym: HI0839

Alternate gene names: 30995406

Gene position: 889367-888351 (Counterclockwise)

Preceding gene: 16272785

Following gene: 16272779

Centisome position: 48.6

GC content: 35.0

Gene sequence:

>1017_bases
ATGAGTATTACCGTTAATCAAACTGTTTTGCATCAGTTAGTCAAAAATGTGGATGGCGACAGTATAAAAATGGAAAGCGT
ATTACGCGACGAGTTGCTGTCCATTACACCAGAAGTAGAACAAATGATGTTGCAATTGCATCAAAGCTATCAAAATAAAG
CTAAGGCTTTTGGCGTGTTTCAGGAAAAGTCTATATTTGCACAACATTTAAATCGTTTATTAGAGCAAGAAATTGAGTTT
TTGGGTTTTAGTCAATATTCAACAAAATTGCTTGCAGATGAGCTAGGTAAATATAACTTTGCGGAAAGTGGCACCTTGAT
TTTATGTCAATATAATTTCTTAGCGACAGATTACTTGTTTATTGCATTGCTTGATAGTCGTCATAGTATGTTAGTCGATG
AGCATTTAGATATTCGCCGTACAGAATATTTGGATATTACTCAGTTTGATATTGCGGCACGGATAAATTTGACGGATTTG
CAAGTAAATGCGAACTCTAATCGTTATTTAACCTTTATAAAAGGTCGTGTTGGTCGCAAAATTAGTGATTTTTTTATGGA
TTTTTTAGGTGCCGAAGAAGGATTAAATCCACAAGTTCAAAATCAATGTTTATTGCAAGCTGTGAGTGATTACTGCGATC
AAGGCGAACTCAACAAAGAGCAAACTCAAGCGGTAAAAAAACAAGTGTTTGAATATTGTAAAGGTCAGCTTTCAAATGGT
AACAATATTGAATTAAGGGAACTTTCTGATTCATTACCCACTCTAAACGAACAGCCTTTTGTCGTCTTTACGGAAAAACA
GAATTATGGTTTGGAAGAGAGTATTCCACCAATACGTTCAACATTGAAATCGCTAACAAAATTCTCTGGGTCAGGAAAGG
GCGTTACCCTAAGTTTTGATGCGGAATTATTGAATACACGTATTCAATGGGATCCTATGACAGATACCCTAACCATCAAA
GGCTTACCACCAAATTTAAAAGATCAATTACAAAAGGCTTTAAAATCAGAGAATTAA

Upstream 100 bases:

>100_bases
CTTATGATACCCGATTATTTGGTAGAACCTAAATAATTTCTTTTTTCTTGCTGAAAAAGTGCGGTTATAATTTGCGGCAA
ATTTTTCAAAGGTGACAAAA

Downstream 100 bases:

>100_bases
TTTGGAAATACACCCAATTTTGGATATTATTTGACAGAACTTTTGCACAAATTAAGGTAAAGAAAATGCAAGTTAAAACA
CTTTTAGGCGCAACCTTTTT

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSITVNQTVLHQLVKNVDGDSIKMESVLRDELLSITPEVEQMMLQLHQSYQNKAKAFGVFQEKSIFAQHLNRLLEQEIEF
LGFSQYSTKLLADELGKYNFAESGTLILCQYNFLATDYLFIALLDSRHSMLVDEHLDIRRTEYLDITQFDIAARINLTDL
QVNANSNRYLTFIKGRVGRKISDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCDQGELNKEQTQAVKKQVFEYCKGQLSNG
NNIELRELSDSLPTLNEQPFVVFTEKQNYGLEESIPPIRSTLKSLTKFSGSGKGVTLSFDAELLNTRIQWDPMTDTLTIK
GLPPNLKDQLQKALKSEN

Sequences:

>Translated_338_residues
MSITVNQTVLHQLVKNVDGDSIKMESVLRDELLSITPEVEQMMLQLHQSYQNKAKAFGVFQEKSIFAQHLNRLLEQEIEF
LGFSQYSTKLLADELGKYNFAESGTLILCQYNFLATDYLFIALLDSRHSMLVDEHLDIRRTEYLDITQFDIAARINLTDL
QVNANSNRYLTFIKGRVGRKISDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCDQGELNKEQTQAVKKQVFEYCKGQLSNG
NNIELRELSDSLPTLNEQPFVVFTEKQNYGLEESIPPIRSTLKSLTKFSGSGKGVTLSFDAELLNTRIQWDPMTDTLTIK
GLPPNLKDQLQKALKSEN
>Mature_337_residues
SITVNQTVLHQLVKNVDGDSIKMESVLRDELLSITPEVEQMMLQLHQSYQNKAKAFGVFQEKSIFAQHLNRLLEQEIEFL
GFSQYSTKLLADELGKYNFAESGTLILCQYNFLATDYLFIALLDSRHSMLVDEHLDIRRTEYLDITQFDIAARINLTDLQ
VNANSNRYLTFIKGRVGRKISDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCDQGELNKEQTQAVKKQVFEYCKGQLSNGN
NIELRELSDSLPTLNEQPFVVFTEKQNYGLEESIPPIRSTLKSLTKFSGSGKGVTLSFDAELLNTRIQWDPMTDTLTIKG
LPPNLKDQLQKALKSEN

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=338, Percent_Identity=52.0710059171598, Blast_Score=350, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 38516; Mature: 38385

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITVNQTVLHQLVKNVDGDSIKMESVLRDELLSITPEVEQMMLQLHQSYQNKAKAFGVF
CEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
QEKSIFAQHLNRLLEQEIEFLGFSQYSTKLLADELGKYNFAESGTLILCQYNFLATDYLF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHH
IALLDSRHSMLVDEHLDIRRTEYLDITQFDIAARINLTDLQVNANSNRYLTFIKGRVGRK
HHHHHCCCHHHHHCCCCCCHHCCCCEEEEEEEEEEEEEEEEEECCCCEEEEEECCHHCCH
ISDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCDQGELNKEQTQAVKKQVFEYCKGQLSNG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
NNIELRELSDSLPTLNEQPFVVFTEKQNYGLEESIPPIRSTLKSLTKFSGSGKGVTLSFD
CCEEHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
AELLNTRIQWDPMTDTLTIKGLPPNLKDQLQKALKSEN
HHHHCCEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SITVNQTVLHQLVKNVDGDSIKMESVLRDELLSITPEVEQMMLQLHQSYQNKAKAFGVF
EEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
QEKSIFAQHLNRLLEQEIEFLGFSQYSTKLLADELGKYNFAESGTLILCQYNFLATDYLF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHH
IALLDSRHSMLVDEHLDIRRTEYLDITQFDIAARINLTDLQVNANSNRYLTFIKGRVGRK
HHHHHCCCHHHHHCCCCCCHHCCCCEEEEEEEEEEEEEEEEEECCCCEEEEEECCHHCCH
ISDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCDQGELNKEQTQAVKKQVFEYCKGQLSNG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
NNIELRELSDSLPTLNEQPFVVFTEKQNYGLEESIPPIRSTLKSLTKFSGSGKGVTLSFD
CCEEHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
AELLNTRIQWDPMTDTLTIKGLPPNLKDQLQKALKSEN
HHHHCCEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA