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The map label for this gene is ybaO [C]

Identifier: 30995364

GI number: 30995364

Start: 253772

End: 254233

Strand: Direct

Name: ybaO [C]

Synonym: HI0224

Alternate gene names: 30995364

Gene position: 253772-254233 (Clockwise)

Preceding gene: 16272185

Following gene: 16272189

Centisome position: 13.87

GC content: 37.23

Gene sequence:

>462_bases
ATGCAAACACTGGATAAATTAGATCGTCATATTTTGAATGTATTACAACAAGATGCCATGATTCCGTTAAAAGAACTGTC
AGAGAAAGTGAATAGTTCCGTTGCAACCTGTCAACGACGTGTGCAATCATTAACTGATTCAGGCATTATTACAAAACGAG
TTGCAGTTGTTTCCCCAAAAGCCGTTGGGCGTACGATTAGCGTATTTGTCATGGTCGAAATGGATAATCAACATTCTTAT
TATCAAGAGCAATTTGAACGGAAAATGCGTCAAGAAGACGAAGTGGTGAGCTGTTACGAAATCTCAGGGGACTATGATTT
TATGTTGCTACTCCATGCAAAAGATATGGAAAGCTATCACGCATTCACACGCCGAGTATTGACGGGTGAATTTCATGTAA
GAACTTATAAAAGTTTATTTGTAATGAATTTTACCAAAGCAGATAGTGGAATTATCTTATAG

Upstream 100 bases:

>100_bases
ATGTGATTATTATAAAAGCCCAAGGCAATAAAAAATCTCAACTTTATTTTTTATTGTGATAATATTTTTCTCAATAGTTA
CATTTTTGAGAAATTATCTT

Downstream 100 bases:

>100_bases
AACAAGTGCGGTAAATTTTTACCGCACTTTGTGTATGATTAGTTTAGTTTTGTCGTTTGTTTTAAGAATAAATACCCAAG
TATTGCCGAAACCGTTGATC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MQTLDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPKAVGRTISVFVMVEMDNQHSY
YQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL

Sequences:

>Translated_153_residues
MQTLDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPKAVGRTISVFVMVEMDNQHSY
YQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL
>Mature_153_residues
MQTLDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPKAVGRTISVFVMVEMDNQHSY
YQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081742, Length=140, Percent_Identity=30, Blast_Score=92, Evalue=1e-20,
Organism=Escherichia coli, GI1787116, Length=136, Percent_Identity=33.8235294117647, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y224_HAEIN (P44580)

Other databases:

- EMBL:   L42023
- PIR:   B64056
- RefSeq:   NP_438396.2
- ProteinModelPortal:   P44580
- SMR:   P44580
- GeneID:   951138
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0224
- NMPDR:   fig|71421.1.peg.214
- TIGR:   HI_0224
- HOGENOM:   HBG740878
- OMA:   KFETRIG
- ProtClustDB:   CLSK809852
- BioCyc:   HINF71421:HI_0224-MONOMER
- GO:   GO:0005622
- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00033
- SMART:   SM00344

Pfam domain/function: PF01037 AsnC_trans_reg; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 17718; Mature: 17718

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPK
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCH
AVGRTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYH
HHCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCHHHHH
AFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL
HHHHHHHCCHHHHHHHHHHHEEEECCCCCCCCC
>Mature Secondary Structure
MQTLDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPK
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCH
AVGRTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYH
HHCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCHHHHH
AFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL
HHHHHHHCCHHHHHHHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800