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The map label for this gene is 16273380

Identifier: 16273380

GI number: 16273380

Start: 1559962

End: 1560681

Strand: Reverse

Name: 16273380

Synonym: HI1476

Alternate gene names: NA

Gene position: 1560681-1559962 (Counterclockwise)

Preceding gene: 16273384

Following gene: 16273379

Centisome position: 85.28

GC content: 43.06

Gene sequence:

>720_bases
ATGCAGTACCAAAATCAAGACAATTTCCCAGAAAGGATTGAATATCTAGTAGATAAACTGAATGGCCCAAGCGAATTTGC
TCGAAAAACAGGCGTAACACTTTCTACAATTACAAGATGGCGAAAAGGTGAAGCCGATCCATCTCGTTCCAACCTTGTAA
AAATTGCAGAAGTTACAGGAGTAAGCATTGAATGGCTTGCGACCGGTAAAATAAAAGAAGAAAAGACAACAGAAGAAAAG
CCTGCAGGAAGCCTTGTTAGCCGTGCATTTGAAAGAATGCAAGCCATGTTAGAGGAAGGGGTGAGTATGATTGATAGTTA
TAGCTCCATCAACGTTTCTGCAGGATTTGGGAGTTTTAACGAGGGTATCACCCAGCCTGATGGACAAGAGCCGTATTCAG
ACGAATTGCTAACAAGCCTAGGCGTAAAAGCAGATAACTGCGCCGTATTCTGGGCAAACGGCAATTCAATGCTGCCAACT
ATCAATAACTACGATCAGATGTTAGTAGATTTAAGCCGCAAAGAAATTCAAGGCGACCGCATTTACCTTGTTCAAAACGG
CGAAAGTGTGTGGGTTAAGCGTGTGAAGATGGAATGGGACGGCATTTCGCTTATCAGCGATAACAAAGAGGAATACCCGC
CAATCAGCATTACAGGCGAAAATGCTCAAAACCTACAAATCATCGGGCAAGTAGTGCATATCGGGCATAGCCTGATTTAA

Upstream 100 bases:

>100_bases
ATAAAAACAATGACTTAATTAGTTCTATTACGGGTAATAATTTAGTTTTTAATCCCGTAATAGTTGTAATTATTCAACTA
TTACGACTAAAGAGGTTAGT

Downstream 100 bases:

>100_bases
AGATTTAAACGCCATTTAAACGGGCGTTTTCTTTTTTGTTTAAATTCTTAGTTTTTCTGGTTCATTTTGACTAAATCAAC
CAAAGATCTGATTTTTTCTT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTGVSIEWLATGKIKEEKTTEEK
PAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPT
INNYDQMLVDLSRKEIQGDRIYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI

Sequences:

>Translated_239_residues
MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTGVSIEWLATGKIKEEKTTEEK
PAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPT
INNYDQMLVDLSRKEIQGDRIYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI
>Mature_239_residues
MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTGVSIEWLATGKIKEEKTTEEK
PAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPT
INNYDQMLVDLSRKEIQGDRIYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI

Specific function: Unknown

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1476_HAEIN (P44207)

Other databases:

- EMBL:   L42023
- PIR:   A64031
- RefSeq:   NP_439627.1
- ProteinModelPortal:   P44207
- GeneID:   950582
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1476
- NMPDR:   fig|71421.1.peg.1407
- TIGR:   HI_1476
- HOGENOM:   HBG495805
- OMA:   FRTDFLL
- ProtClustDB:   CLSK986424
- BioCyc:   HINF71421:HI_1476-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056
- Gene3D:   G3DSA:2.10.109.10
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24; SSF47413 Lambda_like_DNA; SSF51306 Pept_S24_S26_C

EC number: NA

Molecular weight: Translated: 26668; Mature: 26668

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTG
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHCEEEEEEECC
VSIEWLATGKIKEEKTTEEKPAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFN
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
EGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPTINNYDQMLVDLSRKEIQGDR
CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHHHCCCCE
IYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI
EEEEECCCEEEEEEEEECCCCEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTG
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHCEEEEEEECC
VSIEWLATGKIKEEKTTEEKPAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFN
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
EGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPTINNYDQMLVDLSRKEIQGDR
CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHHHCCCCE
IYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI
EEEEECCCEEEEEEEEECCCCEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023