Click here to switch to the map view.

The map label for this gene is xylA [H]

Identifier: 16273037

GI number: 16273037

Start: 1177909

End: 1179228

Strand: Direct

Name: xylA [H]

Synonym: HI1112

Alternate gene names: 16273037

Gene position: 1177909-1179228 (Clockwise)

Preceding gene: 16273030

Following gene: 16273038

Centisome position: 64.36

GC content: 35.98

Gene sequence:

>1320_bases
ATGACAACCTATTTCGATAAAATTGAAAAAATCTCCTTTGAGGGAGAAAAATCCACAAATCCTTTTGCTTTCAAACATTA
TGATGCTAATCAAGTAATTTTAGGTAAAACTATGGCTGAACATTTACGCTTAGCGGTGTGTTATTGGCATACCTTTTGCT
GGAATGGGAATGATATGTTTGGGCTAGGTTCTTTGGAACGAAGTTGGCAGAAAAATTCAAATTTGCTTGCTGGCGCAGAA
CAAAAAGCCGATATTGCTTTTGAGTTTTTGAATAAGTTAGGCGTGCCTTATTATTGTTTTCATGATGTCGATATTGCACC
TGAAGGTAATTCAGTGCGGGAATATGTACAAAATTTTCATCATATTGTTGATATTTTAGAACGCAAACAAGTAGAAACGG
GTGTAAAACTCTTATGGGGAACTGCAAATTGTTTTACTAATCCTCGTTATATGTCTGGTGCAGCAACCAATCCTAATCCT
GAGGTTTTTGCTTGGGCTGCAACACAAGTGTTTAATGCGATGAATGCCACTCAACGTTTAGGTGGAGAAAATTACGTATT
ATGGGGTGGACGTGAGGGATATGAAACTTTATTGAATACCGATTTGAAACGTGAACGTGAACAAATTGGTCGTTTTATGC
AAATGGTGGTAGAACATAAGCATAAAATTGGGTTTAAAGGTACATTATTAATTGAGCCAAAACCGCAAGAACCAACTAAA
CATCAATATGATTATGATGTGGCAACAGTGTATGGTTTCCTAAAACAATTTGGTTTAGAAAAAGAAATTAAAGTTAATAT
TGAAGCTAACCACGCGACGCTTGCTGGCCATACCTTTCAACATGAAATTGCAACAGCTTGTGCATTAGATATTTTTGGCT
CAATTGATGCTAATCGTGGCGATCCACAATTAGGCTGGGATACCGACCAATTCCCAAATAGTGTTGAAGAAAACACGTTA
GTTATGTATGAAATTTTAAAACATGGTGGTTTTACTACTGGAGGTTTTAATTTTGATGCGAAAATTCGCCGACAAAGTAT
TGATCCTTATGATTTATTTTACGCTCATATCGGTGCAATTGATGTATTGGCATTATCCTTAAAACGTGCAGCAAAAATGT
TACAAGAGGAAACCTTACAAAAAATTGTTAATGAACGCTATGCAGGTTGGAATAGTGAACTTGGTCAGCATATTTTGCAA
GGCAAAACTTCACTTGAAACACTTGCGCAACTTGTCCAACAAAAAGATTTAGCACCAAAACCAGTTTCAGGTCAGCAAGA
ATATTTGGAAAATTTGGTAAACCAAGTTATTTATAGCTAA

Upstream 100 bases:

>100_bases
TTGCAAATAATCAACATAGAAAAATTAAATAACATAATTGATGAAAAGTTAGTTTTTCACAAAAATACGAAAAATTTCAT
CACCTAGAGAGGAAAATGTT

Downstream 100 bases:

>100_bases
AAATGAAGCAAAAGTGCGGTTGTATTCCACCGCACTTTTTTATTTTAGGAGACATTATGTATATAGGAATTGATTGTGGC
ACACAAGGAACAAAGGCGAT

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MTTYFDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAVCYWHTFCWNGNDMFGLGSLERSWQKNSNLLAGAE
QKADIAFEFLNKLGVPYYCFHDVDIAPEGNSVREYVQNFHHIVDILERKQVETGVKLLWGTANCFTNPRYMSGAATNPNP
EVFAWAATQVFNAMNATQRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQMVVEHKHKIGFKGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHTFQHEIATACALDIFGSIDANRGDPQLGWDTDQFPNSVEENTL
VMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAIDVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQ
GKTSLETLAQLVQQKDLAPKPVSGQQEYLENLVNQVIYS

Sequences:

>Translated_439_residues
MTTYFDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAVCYWHTFCWNGNDMFGLGSLERSWQKNSNLLAGAE
QKADIAFEFLNKLGVPYYCFHDVDIAPEGNSVREYVQNFHHIVDILERKQVETGVKLLWGTANCFTNPRYMSGAATNPNP
EVFAWAATQVFNAMNATQRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQMVVEHKHKIGFKGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHTFQHEIATACALDIFGSIDANRGDPQLGWDTDQFPNSVEENTL
VMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAIDVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQ
GKTSLETLAQLVQQKDLAPKPVSGQQEYLENLVNQVIYS
>Mature_438_residues
TTYFDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAVCYWHTFCWNGNDMFGLGSLERSWQKNSNLLAGAEQ
KADIAFEFLNKLGVPYYCFHDVDIAPEGNSVREYVQNFHHIVDILERKQVETGVKLLWGTANCFTNPRYMSGAATNPNPE
VFAWAATQVFNAMNATQRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQMVVEHKHKIGFKGTLLIEPKPQEPTKH
QYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHTFQHEIATACALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLV
MYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAIDVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQG
KTSLETLAQLVQQKDLAPKPVSGQQEYLENLVNQVIYS

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=438, Percent_Identity=71.4611872146119, Blast_Score=692, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49897; Mature: 49766

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTYFDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAVCYWHTFCWNGNDMF
CCCHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHEEECCCCEE
GLGSLERSWQKNSNLLAGAEQKADIAFEFLNKLGVPYYCFHDVDIAPEGNSVREYVQNFH
CCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEEECCEECCCCCHHHHHHHHHH
HIVDILERKQVETGVKLLWGTANCFTNPRYMSGAATNPNPEVFAWAATQVFNAMNATQRL
HHHHHHHHHHHHHCHHEEEECHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLKREREQIGRFMQMVVEHKHKIGFKGTLLIEPKPQEPTK
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHTFQHEIATACALDIFGSIDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCCCC
DPQLGWDTDQFPNSVEENTLVMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAI
CCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
DVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQGKTSLETLAQLVQQKDLAPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
PVSGQQEYLENLVNQVIYS
CCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTYFDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAVCYWHTFCWNGNDMF
CCHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHEEECCCCEE
GLGSLERSWQKNSNLLAGAEQKADIAFEFLNKLGVPYYCFHDVDIAPEGNSVREYVQNFH
CCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEEECCEECCCCCHHHHHHHHHH
HIVDILERKQVETGVKLLWGTANCFTNPRYMSGAATNPNPEVFAWAATQVFNAMNATQRL
HHHHHHHHHHHHHCHHEEEECHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLKREREQIGRFMQMVVEHKHKIGFKGTLLIEPKPQEPTK
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHTFQHEIATACALDIFGSIDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCCCC
DPQLGWDTDQFPNSVEENTLVMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAI
CCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
DVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQGKTSLETLAQLVQQKDLAPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
PVSGQQEYLENLVNQVIYS
CCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA