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The map label for this gene is cydB [C]

Identifier: 16273004

GI number: 16273004

Start: 1139203

End: 1140339

Strand: Reverse

Name: cydB [C]

Synonym: HI1075

Alternate gene names: 16273004

Gene position: 1140339-1139203 (Counterclockwise)

Preceding gene: 16273005

Following gene: 16273003

Centisome position: 62.31

GC content: 36.5

Gene sequence:

>1137_bases
ATGATTGATTATGAATTTCTACGTTTTATTTGGTGGGTGTTAGTTATTGTATTATTGATTGGCTTCTCTGTAACTGATGG
ATTTGATATGGGCGTGACCGCACTTTTACCTGTAATAGGTAAAAAAGAAGTGGAACGCCGTATTATGATCAACACTATTG
CTCCCCATTGGGATGGTAACCAAGTTTGGTTATTAACTGCAGGTGGTGCAATATTTGCAGCTTGGCCAATTGTATATGCA
GTATCTTTCTCAGGTTTTTACATTGCATTAGTATTAGTCTTGGCAGCGTTATTCTTACGTCCATTGGGTTTTGAATACCG
TGCAAAAATTGATAATCCAACTTGGCGTTCTGTTTGGGACTGGGGATTATTCGCAGGTGGTTTTGTACCAGCATTAGTAT
TTGGCGTGGCTTTTGGTAATTTATTACAAGGCGTTCCATTCCATTTTAACGAATTAACTCAAGTGACTTATACAGGTTCA
TTTTTTGAGCTATTAAATCCATTCGCATTATTATGTGGTGTTATTAGCTTATCAATGCTTGTCACTCACGGCGCAAACTG
GTTACAAATGAAAACCACTGAAGCCTTACGTGATCGTGCTCGTACAGTAAGTCAAATTGGTTCTATTGTGACTTTGATTG
CATTCGTATTAGCTGGCGTATGGTTATATTCTAAAGATGGTTATGTAGTTACTAGCACTATCGATCATTTCGCTCCATCG
TCTCCAATGAATAAAGAAGTTGCTGTAGAAACTGGCGCGTGGTTTAGAAATTTCAATGAAATGCCAATTCTTTGGATTTT
CCCTGCGTTAGCTGTAGTTGCTGCATTATTAAATGCTGCATTTTCTAAAGCTAATCGTTGTGGTTTTGCATTTTTCTTCT
CTGCATTAACAATGGCTGGTGTGATTATTACTGCAGCAGTATCAATGTTCCCATTTGTGATGCCTTCAAGTTCACATCCT
GAACAAAGTTTATTAATGTGGGATTCGACTTCAAGTGAATTAACATTAACATTAATGCTGATTTTTGCAGTTGTTTTTGT
GGTCATTGCTTTAGCTTATACTATTTGGTCTTACTCAAAAATGTTTGGTCGTTTAGATGCTAATTTCATTGATAAAAATA
AACACTCATTATACTAA

Upstream 100 bases:

>100_bases
AGATGTATTTGATGTTTAAATATGCGCGTTTGGGTCCAAGTGCGTTAAAAACCGGCAAATACTACTTTGAACAATCAGCT
AAATAAGTAGGAGATAAATT

Downstream 100 bases:

>100_bases
GGAGAAATAGAATGTTATATGCGATTTGGGTAGTGGGTGTATTGTTTGCAATTTGGCTAGCGCGAAATGCACCATCAATA
AAGAAAAAAAAGGTAAATTT

Product: putative cytochrome oxidase subunit II

Products: NA

Alternate protein names: Cytochrome oxidase subunit II

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYA
VSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGS
FFELLNPFALLCGVISLSMLVTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLYSKDGYVVTSTIDHFAPS
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAGVIITAAVSMFPFVMPSSSHP
EQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSKMFGRLDANFIDKNKHSLY

Sequences:

>Translated_378_residues
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYA
VSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGS
FFELLNPFALLCGVISLSMLVTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLYSKDGYVVTSTIDHFAPS
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAGVIITAAVSMFPFVMPSSSHP
EQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSKMFGRLDANFIDKNKHSLY
>Mature_378_residues
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYA
VSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGS
FFELLNPFALLCGVISLSMLVTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLYSKDGYVVTSTIDHFAPS
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAGVIITAAVSMFPFVMPSSSHP
EQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSKMFGRLDANFIDKNKHSLY

Specific function: Probable cytochrome oxidase subunit

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=61.2137203166227, Blast_Score=487, Evalue=1e-139,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=50.6596306068602, Blast_Score=402, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYOB_HAEIN (P45020)

Other databases:

- EMBL:   L42023
- PIR:   D64181
- RefSeq:   NP_439231.1
- GeneID:   949877
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1075
- NMPDR:   fig|71421.1.peg.1032
- TIGR:   HI_1075
- HOGENOM:   HBG413915
- OMA:   IGFAIMD
- ProtClustDB:   CLSK870317
- BioCyc:   HINF71421:HI_1075-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003317
- TIGRFAMs:   TIGR00203

Pfam domain/function: PF02322 Cyto_ox_2

EC number: 1.10.3.-

Molecular weight: Translated: 42068; Mature: 42068

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdda343c)-; HASH(0xd2abc94)-; HASH(0xdadc3d8)-; HASH(0xdafced0)-; HASH(0xd727ea8)-; HASH(0xd1b9c74)-; HASH(0xd0b66c0)-; HASH(0xdf6ebf8)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCC
QVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHHHH
WGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGSFFELLNPFALLCGVISLSML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHH
VTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLYSKDGYVVTSTIDHFAPS
HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHCCCC
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAG
CCCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VIITAAVSMFPFVMPSSSHPEQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSK
HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDANFIDKNKHSLY
HHHCCCCHHHCCCCCCCH
>Mature Secondary Structure
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCC
QVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHHHH
WGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGSFFELLNPFALLCGVISLSML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHH
VTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLYSKDGYVVTSTIDHFAPS
HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHCCCC
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAG
CCCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VIITAAVSMFPFVMPSSSHPEQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSK
HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDANFIDKNKHSLY
HHHCCCCHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800