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The map label for this gene is yhdJ [C]

Identifier: 16272988

GI number: 16272988

Start: 1121801

End: 1123690

Strand: Reverse

Name: yhdJ [C]

Synonym: HI1056

Alternate gene names: 16272988

Gene position: 1123690-1121801 (Counterclockwise)

Preceding gene: 16272989

Following gene: 30995419

Centisome position: 61.4

GC content: 35.19

Gene sequence:

>1890_bases
ATGGCGGGCAAAGCACCGAAGAAGGCGAAGAAATTTATTTTAAACGCAATAATAGTCAGTCAGTCAGTCAGTCAGTCAGT
CAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGT
CAGTCAGTCAGTCAGTCAGTCAATTATACACCAAATTAACCCGAAAAAGACAAGAAATCTTTTTTAATCAAACGCTTGCT
TTTGATGAAATTGACCGGCTTTTTGACGCAAAAGCATTCTCAAAATTCTCTCGCTATACCGCAGACGGCAAACAAGCCGT
TGGCGAAATAAAACGCCATTCTGACGGCACGCCTGCTGAAAATCTCATTATCAAAGGCAATAATCTAATAGCCCTGCATT
CGCTTGCCAAGCAGTTTAAAGGTAAAGTTAAGCTGATTTATATTGACCCGCCGTATAACACGGGCAATGACGGTTTCAAA
TACAACGATAAATTTAATCATTCCACTTGGCTGACTTTTATGAAAAATCGGCTGGAAATTGCGAAAACATTGTTAGCTGA
TGATGGCGTGATTTTTGTTCAATGTGATGACATTGAACAAGCTTATTTGAAAATATTGATGGATGATATTTTTGATAGAG
ATAATTTTTTGAATATTGTTACTGTTAAAACCAAAATTGGTGGTGTATCAGGAAGTTCAGAAGGTAAAAGTTTAAAAGAT
TCTACTGAATTTATTAATGTTTTTTCAAAAAATAGAGAAAGATTATTTCTTAACCCAGTTTATCAGAAAACAGAAGTTAA
TGAGTTTATTAAAAACTATGAAGATAGTGGAAAAAGTTGGAAATATACGCAGGTTCTTATTGATTTAGGTGAGAAAATAC
TTTTAGAAGAAAAGGATGGCTTCAAATATTATCATTATCCTAACGCACAGATGACTTCAATTGTTAAATTTTCACAAGAT
CAAAATTTATCAAAAGAAATAATTTATACGGAGTATTCACATAAAGTTTATAGAACTACAAATGCTCAATCTAGCATCAG
AAGCAAGATAATTGAAGATTTATATTCCATAAAAAATGGTATTGTTAGCATTGAGTATATTCCACAAAAGGGTAAAAACG
CAGGTAATCTTATAGAAGTTTTTTACAATGCTTCAAATAAAGATATGTTTATGTTCCTATCTGATATGCTAATCAAAGAA
AAAAATAAATATTTTTACTTACAAAAGGTTAATACACTATGGGACGATATTCAATATAACAATCTAAATAAAGAGGGGGG
ATATATTGATTTTAAAAATGGAAAAAAACCAGAAGCCTTATTACGCCGAATAATTGATATGACAACAAAAGAGGGCGACA
TCGTCCTAGACTACCATCTTGGCAGTGGTACAACCGCTGCCGTTGCTCACAAAATGAACCGCCAATATATCGGCATTGAA
CAAATGGATTATATTGAAACGCTTGCCGTTGAACGCTTGAAAAAAGTGATTGATGGCGAGCAAGGCGGTATATCCAAAGC
CGTGAATTGGCAAGGTGGTGGCGAGTTTGTTTATGCAGAACTTGCTCCATTTAACGAAACCGCAAAACAACAAATTTTGG
CGTGCGAAGATTCAGACGACATCAAAACGCTGTTTGAAGATTTATGCGAACGCTATTTCCTAAAATACAACGTCAGCGTG
AAAGAATTTAGTCAAATTATTGAAGAGCCTGAATTTCAATCTTTGCCATTAGACGAACAAAAACAAATGGTGCTTGAAAT
GTTGGATTTAAATCAAATGTATGTTTCATTATCCGAAATGGACGATGAACAATTTGCAGGATGCTTAAATGATGACGATA
AAGCGTTAAGCCGTGCGTTCTATCAAGCGGAGAAAAAAGATGGCGAATGA

Upstream 100 bases:

>100_bases
ACAAAATACGCCAATCGCATTGGCTTGACGGACGGCAACCGCTTTTTGAAAGACAGTTCGGATATTGTGTTGGATTTTCC
GTTTAAAGATTGTGTATTGA

Downstream 100 bases:

>100_bases
TAAAACTTTGTTTGATTGGGTGGAAGACCGCAAATCAACCCTAGAAGAAATGGAGCAGACGGATTTTTTCGCACTGCCTG
AATTTGTAGAACGCAATTTA

Product: type III restriction-modification system methyltransferase-like protein

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase

Number of amino acids: Translated: 629; Mature: 628

Protein sequence:

>629_residues
MAGKAPKKAKKFILNAIIVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQLYTKLTRKRQEIFFNQTLA
FDEIDRLFDAKAFSKFSRYTADGKQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFK
YNDKFNHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDDIFDRDNFLNIVTVKTKIGGVSGSSEGKSLKD
STEFINVFSKNRERLFLNPVYQKTEVNEFIKNYEDSGKSWKYTQVLIDLGEKILLEEKDGFKYYHYPNAQMTSIVKFSQD
QNLSKEIIYTEYSHKVYRTTNAQSSIRSKIIEDLYSIKNGIVSIEYIPQKGKNAGNLIEVFYNASNKDMFMFLSDMLIKE
KNKYFYLQKVNTLWDDIQYNNLNKEGGYIDFKNGKKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE
QMDYIETLAVERLKKVIDGEQGGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDDIKTLFEDLCERYFLKYNVSV
KEFSQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQAEKKDGE

Sequences:

>Translated_629_residues
MAGKAPKKAKKFILNAIIVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQLYTKLTRKRQEIFFNQTLA
FDEIDRLFDAKAFSKFSRYTADGKQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFK
YNDKFNHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDDIFDRDNFLNIVTVKTKIGGVSGSSEGKSLKD
STEFINVFSKNRERLFLNPVYQKTEVNEFIKNYEDSGKSWKYTQVLIDLGEKILLEEKDGFKYYHYPNAQMTSIVKFSQD
QNLSKEIIYTEYSHKVYRTTNAQSSIRSKIIEDLYSIKNGIVSIEYIPQKGKNAGNLIEVFYNASNKDMFMFLSDMLIKE
KNKYFYLQKVNTLWDDIQYNNLNKEGGYIDFKNGKKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE
QMDYIETLAVERLKKVIDGEQGGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDDIKTLFEDLCERYFLKYNVSV
KEFSQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQAEKKDGE
>Mature_628_residues
AGKAPKKAKKFILNAIIVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQLYTKLTRKRQEIFFNQTLAF
DEIDRLFDAKAFSKFSRYTADGKQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY
NDKFNHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDDIFDRDNFLNIVTVKTKIGGVSGSSEGKSLKDS
TEFINVFSKNRERLFLNPVYQKTEVNEFIKNYEDSGKSWKYTQVLIDLGEKILLEEKDGFKYYHYPNAQMTSIVKFSQDQ
NLSKEIIYTEYSHKVYRTTNAQSSIRSKIIEDLYSIKNGIVSIEYIPQKGKNAGNLIEVFYNASNKDMFMFLSDMLIKEK
NKYFYLQKVNTLWDDIQYNNLNKEGGYIDFKNGKKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ
MDYIETLAVERLKKVIDGEQGGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDDIKTLFEDLCERYFLKYNVSVK
EFSQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSRAFYQAEKKDGE

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): T3MH_HAEIN (P71366)

Other databases:

- EMBL:   L42023
- PIR:   C64180
- RefSeq:   NP_439215.1
- ProteinModelPortal:   P71366
- REBASE:   3701
- GeneID:   950036
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1056
- NMPDR:   fig|71421.1.peg.1016
- TIGR:   HI_1056
- HOGENOM:   HBG575869
- OMA:   EDAWGID
- BioCyc:   HINF71421:HI_1056-MONOMER
- BRENDA:   2.1.1.72
- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091
- PRINTS:   PR00508

Pfam domain/function: PF01555 N6_N4_Mtase

EC number: =2.1.1.72

Molecular weight: Translated: 71846; Mature: 71715

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKAPKKAKKFILNAIIVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLYTKLTRKRQEIFFNQTLAFDEIDRLFDAKAFSKFSRYTADGKQAVGEIKRHSDGTPAE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYNDKFNHSTWLTFMKNRLEI
CEEEECCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHH
AKTLLADDGVIFVQCDDIEQAYLKILMDDIFDRDNFLNIVTVKTKIGGVSGSSEGKSLKD
HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCHH
STEFINVFSKNRERLFLNPVYQKTEVNEFIKNYEDSGKSWKYTQVLIDLGEKILLEEKDG
HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCEEEECCCC
FKYYHYPNAQMTSIVKFSQDQNLSKEIIYTEYSHKVYRTTNAQSSIRSKIIEDLYSIKNG
CEEEECCCCHHHHHHHHCCCCCCCHHEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHCC
IVSIEYIPQKGKNAGNLIEVFYNASNKDMFMFLSDMLIKEKNKYFYLQKVNTLWDDIQYN
CEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCC
NLNKEGGYIDFKNGKKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE
CCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCEECCH
QMDYIETLAVERLKKVIDGEQGGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHEEECCCCHH
IKTLFEDLCERYFLKYNVSVKEFSQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEM
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
DDEQFAGCLNDDDKALSRAFYQAEKKDGE
CHHHHHCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AGKAPKKAKKFILNAIIVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLYTKLTRKRQEIFFNQTLAFDEIDRLFDAKAFSKFSRYTADGKQAVGEIKRHSDGTPAE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYNDKFNHSTWLTFMKNRLEI
CEEEECCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHH
AKTLLADDGVIFVQCDDIEQAYLKILMDDIFDRDNFLNIVTVKTKIGGVSGSSEGKSLKD
HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCHH
STEFINVFSKNRERLFLNPVYQKTEVNEFIKNYEDSGKSWKYTQVLIDLGEKILLEEKDG
HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCEEEECCCC
FKYYHYPNAQMTSIVKFSQDQNLSKEIIYTEYSHKVYRTTNAQSSIRSKIIEDLYSIKNG
CEEEECCCCHHHHHHHHCCCCCCCHHEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHCC
IVSIEYIPQKGKNAGNLIEVFYNASNKDMFMFLSDMLIKEKNKYFYLQKVNTLWDDIQYN
CEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCC
NLNKEGGYIDFKNGKKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE
CCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCEECCH
QMDYIETLAVERLKKVIDGEQGGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHEEECCCCHH
IKTLFEDLCERYFLKYNVSVKEFSQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEM
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
DDEQFAGCLNDDDKALSRAFYQAEKKDGE
CHHHHHCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800