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The map label for this gene is ykgD [C]

Identifier: 16272984

GI number: 16272984

Start: 1117575

End: 1118471

Strand: Reverse

Name: ykgD [C]

Synonym: HI1052

Alternate gene names: 16272984

Gene position: 1118471-1117575 (Counterclockwise)

Preceding gene: 16272986

Following gene: 16272983

Centisome position: 61.11

GC content: 35.01

Gene sequence:

>897_bases
ATGGACTATTTAGATAAACTTACCCATTTAGCACAAGTGCGTGGAGAAATTAATATTCGCTGTGAATTTCAAGGCGAATG
GCAAATATCTCATCAAGAAAAGGATGCAGGAAAAGGCATATTCCATCTTATTGAACAAGGCGAGTGCTGGCTTACACTAA
ATGAAAAACAATTTCATTTAAAAGAGGGGGATGTTTTTTTTCTTCCTCAAAATCAACCGCACTCTATGCATTATTCAGCA
AATAAAAGAGCGGATATTCCTACAAAAAAAAGTCATCAAGGATTATTTGAGTTACATCAGATTGGACGAGGTACACCAGA
TTTAAAAATGTTCTGCGGTAATTTTTATTATCAACAAGATGCGCTTCTTACAGCATCAATGCCTGAATATTTACATATAA
ATTTATGCGACACACCAATTCATCCTTTAGTACAGCTTTTTTTACAAGAAGCGCAAAAAAATGATGCGGGTACGAAATCC
GTCGTTGATGCACTTTCAAATGTACTTTTAATTTATATTTTACGCCACGCTATTCAACAAAATTTAATTGAACAAGGCAT
CTTATTTGCCTTGCAAGATAAGCGATTAAATACTGCACTGATCGCAATATTACAACAACCTCAAAATGATTGGCATATTG
AACAATTAGCTGAACTTGCAACAATGTCTCGTGCAAACTTTATTCGTATCTTTCAACAACATATTGGTATGTCGCCAGGA
CGTTTTCTCACGAAAGTGCGGTTACAATCTGCGGCGTTTTTATTAAAACAATCACAACAATCTGTGCTTGCCATTGCTTT
AGAAGTGGGGTATCAATCAGAAGCTCATTTTTGTAAAGTTTTTAAAAATTACTACCAACTTTCTCCAAGCCAATACAGAA
AATCTGTCAGCCTATAA

Upstream 100 bases:

>100_bases
AAATATATTGAATTAATAACCAACTGGTGTGGCAAATTATAGGCGGATTAGATTATGATACTTGCTTATTTATCTCAATT
TTTATCGCTAACATCTCATT

Downstream 100 bases:

>100_bases
ATTGATTTGTTTTTGTGCTATAATAATATGCACTTCTAAAAGGCAACCTGCGTTGCCTTTCTTTTTAAGGAAAAGATATG
TTTAACAAAATTTTTTCGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQFHLKEGDVFFLPQNQPHSMHYSA
NKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQDALLTASMPEYLHINLCDTPIHPLVQLFLQEAQKNDAGTKS
VVDALSNVLLIYILRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQHIGMSPG
RFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYRKSVSL

Sequences:

>Translated_298_residues
MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQFHLKEGDVFFLPQNQPHSMHYSA
NKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQDALLTASMPEYLHINLCDTPIHPLVQLFLQEAQKNDAGTKS
VVDALSNVLLIYILRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQHIGMSPG
RFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYRKSVSL
>Mature_298_residues
MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQFHLKEGDVFFLPQNQPHSMHYSA
NKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQDALLTASMPEYLHINLCDTPIHPLVQLFLQEAQKNDAGTKS
VVDALSNVLLIYILRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQHIGMSPG
RFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYRKSVSL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786496, Length=306, Percent_Identity=28.1045751633987, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y1052_HAEIN (P45008)

Other databases:

- EMBL:   L42023
- PIR:   B64180
- RefSeq:   NP_439211.1
- ProteinModelPortal:   P45008
- SMR:   P45008
- GeneID:   950029
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1052
- TIGR:   HI_1052
- HOGENOM:   HBG753078
- OMA:   WLNAAIL
- ProtClustDB:   CLSK808478
- BioCyc:   HINF71421:HI_1052-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- Gene3D:   G3DSA:1.10.10.60
- PRINTS:   PR00032
- SMART:   SM00342

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC; SSF51215 AraC_binding; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 34292; Mature: 34292

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQFHL
CCHHHHHHHHHHHCCCEEEEEEEECCEEECCCCCCCCCHHHHHHHCCCEEEEECCCEEEE
KEGDVFFLPQNQPHSMHYSANKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQD
ECCCEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCEEECC
ALLTASMPEYLHINLCDTPIHPLVQLFLQEAQKNDAGTKSVVDALSNVLLIYILRHAIQQ
CEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQHIGMSPG
HHHHHHHEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYRKSVSL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQFHL
CCHHHHHHHHHHHCCCEEEEEEEECCEEECCCCCCCCCHHHHHHHCCCEEEEECCCEEEE
KEGDVFFLPQNQPHSMHYSANKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQD
ECCCEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCEEECC
ALLTASMPEYLHINLCDTPIHPLVQLFLQEAQKNDAGTKSVVDALSNVLLIYILRHAIQQ
CEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQHIGMSPG
HHHHHHHEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYRKSVSL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800