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The map label for this gene is ygbM [C]

Identifier: 16272948

GI number: 16272948

Start: 1077214

End: 1077990

Strand: Direct

Name: ygbM [C]

Synonym: HI1013

Alternate gene names: 16272948

Gene position: 1077214-1077990 (Clockwise)

Preceding gene: 16272947

Following gene: 16272949

Centisome position: 58.86

GC content: 38.61

Gene sequence:

>777_bases
ATGCCTAAATTTGCAGCAAACTTAACAATGATGTTTAACGAAGTGCCATTTTTAGATCGCTTTGAAGCGGCGGCTAAAGC
AGGCTTTAAATATGTCGAATTCTTATGGCCTTATGATTACCCTGCACAAGAACTCAAAGCAATTTTAGATAAGCATGGCC
TAAAAGTTGTGTTATTTAATACCCCAGCTGGTGATGTAAACAAAGGTGAATGGGGGGGGTCGGCAATCCCTGGCCGAGAA
GCTGATAGCCATAGAGATATTGATTTGGCTCTTGAATATGCACTTGCATTAGGTTGTCCAAATGTACATATCATGTCAGC
AGTTGTGCCAGAAGGTGCAAGCCGTGAAGAATATAAACAAACCTTTATCAAAAACGTACGCTATGCATCTGATAAATATA
AACCATATGGAATCAAAATTCAGCTTGAAGCTTTAAGCCCTGAAGTGAAACCTAATTATTTACTCAAAAGCCAATTTGAT
ACGCTTGAAGTGGTGGAATTGGTTGATCGTGATAATGTATTTGTTCAACTCGACTATTTTCATGCACAAAATGTAGATGG
CAATCTTGCACGTTTAACCGATAAATTAAATGGCAAATTTGCTCACGTTCAAATTGCTTCTGTACCAGACCGTCATGAAC
CCGACGAAGGTGAAATTAACTACCAATATATCTTCGATAAACTAGATGAAATCGGTTATACAGGCTATGTTGGCTGTGAA
TACAAACCACGTGGCGAAACCGTAACGGGATTGGATTGGTTTCAGAAGTATAAATAA

Upstream 100 bases:

>100_bases
TAGAAGAAACCGCAAAATTATTCTTCACTTTGCAAGGACAAAAAATCCGCTATCTCACTGATACCGAAGTGAAAGATTTA
GAAAATAGAGGAAAATAATT

Downstream 100 bases:

>100_bases
ATATTCTTAAATTTAACTGCGGTTTTAAAAACACATATTATCTAAGGAGGATAAAATGAAAGTTGTAATTACTGGTGGAC
AAGGGTTCTTAGGACAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFNTPAGDVNKGEWGGSAIPGRE
ADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQTFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFD
TLEVVELVDRDNVFVQLDYFHAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
YKPRGETVTGLDWFQKYK

Sequences:

>Translated_258_residues
MPKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFNTPAGDVNKGEWGGSAIPGRE
ADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQTFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFD
TLEVVELVDRDNVFVQLDYFHAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
YKPRGETVTGLDWFQKYK
>Mature_257_residues
PKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFNTPAGDVNKGEWGGSAIPGREA
DSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQTFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFDT
LEVVELVDRDNVFVQLDYFHAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCEY
KPRGETVTGLDWFQKYK

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family

Homologues:

Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=40.0763358778626, Blast_Score=197, Evalue=7e-51,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=38.2716049382716, Blast_Score=166, Evalue=2e-41,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=59.6899224806201, Blast_Score=337, Evalue=3e-94,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=39.1472868217054, Blast_Score=197, Evalue=6e-52,
Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=35.8333333333333, Blast_Score=171, Evalue=3e-43,
Organism=Drosophila melanogaster, GI17530883, Length=258, Percent_Identity=30.2325581395349, Blast_Score=142, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1013_HAEIN (Q57151)

Other databases:

- EMBL:   L42023
- PIR:   C64108
- RefSeq:   NP_439174.1
- ProteinModelPortal:   Q57151
- SMR:   Q57151
- GeneID:   950733
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1013
- NMPDR:   fig|71421.1.peg.977
- TIGR:   HI_1013
- HOGENOM:   HBG582536
- OMA:   GVPDRHE
- ProtClustDB:   CLSK870465
- BioCyc:   HINF71421:HI_1013-MONOMER
- InterPro:   IPR013022
- InterPro:   IPR012307
- Gene3D:   G3DSA:3.20.20.150

Pfam domain/function: PF01261 AP_endonuc_2; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: NA

Molecular weight: Translated: 29348; Mature: 29217

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFN
CCCHHHHEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEE
TPAGDVNKGEWGGSAIPGREADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
TFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFDTLEVVELVDRDNVFVQLDYF
HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEEEEE
HAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
EECCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHCCCCEEECCE
YKPRGETVTGLDWFQKYK
ECCCCCEEECHHHHHHCC
>Mature Secondary Structure 
PKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFN
CCHHHHEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEE
TPAGDVNKGEWGGSAIPGREADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
TFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFDTLEVVELVDRDNVFVQLDYF
HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEEEEE
HAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
EECCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHCCCCEEECCE
YKPRGETVTGLDWFQKYK
ECCCCCEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800