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The map label for this gene is yidC [H]

Identifier: 16272937

GI number: 16272937

Start: 1064569

End: 1066194

Strand: Direct

Name: yidC [H]

Synonym: HI1001

Alternate gene names: 16272937

Gene position: 1064569-1066194 (Clockwise)

Preceding gene: 16272936

Following gene: 16272938

Centisome position: 58.17

GC content: 35.85

Gene sequence:

>1626_bases
ATGGACTCAAGACGTAGCCTATTAGTGCTTGCACTGATTTTTATTTCTTTCCTTGTTTATCAGCAATGGCAGTTGGATAA
AAATCCACCTGTGCAAACTGAACAAACAACTTCAATAACTGCCACTTCTGACGTTCCGGCAAGTTCCCCTTCTAATTCAC
AAGCCATAGCTGATTCTCAAACTCGTGGTCGTATTATTACTCTTGAAAACGATGTGTTCCGTTTGAAAATTGATACATTG
GGTGGCGATGTAATTAGCTCTGAATTATTAAAATATGATGCAGAATTGGATTCAAAAACACCGTTTGAATTATTAAAAGA
TACTAAAGAGCATATTTATATTGCGCAAAGTGGTTTAATTGGTAAAAACGGTATTGATACTCGTTCTGGTCGTGCGCAAT
ATCAAATTGAAGGCGATAATTTTAAATTAGCAGAGGGTCAAGAATCTCTTTCTGTACCGCTTCTTTTTGAAAAAGATGGC
GTAACTTATCAAAAAATCTTTGTGTTAAAACGTGGTAGCTATGATTTAGGCGTAGATTACAAGATTGATAACCAAAGTGG
TCAAGCCATTGAAGTTGAGCCTTATGGTCAATTGAAGCATTCTATTGTTGAAAGCTCTGGTAATGTTGCAATGCCTACTT
ATACTGGCGGTGCATATTCTTCTTCAGAAACTAACTATAAAAAATATAGTTTTAGTGATATGCAAGATAATAATCTTTCT
ATTGATACTAAAGCTGGTTGGGTTGCGGTGTTACAACATTATTTCGTTTCTGCGTGGATCCCAAATCAAGATGTAAATAA
TCAACTTTATACAATTACAGATAGTAAAAATAATGTTGCATCAATTGGTTATCGTGGTTCTGTTGTCACTATTCCTGCTG
GTAGCCAAGAGACGATTACAAGTTCATTGTGGACTGGCCCTAAACTTCAAAATCAAATGGCAACTGTCGCAAATAATTTA
GATTTAACTGTTGATTATGGTTGGGCTTGGTTTATTGCTAAACCGTTATTCTGGTTATTAACCTTTATTCAAGGGATTGT
GTCTAACTGGGGTTTAGCGATTATCTGTGTAACAATTGTAGTGAAAGCAATTTTGTATCCTCTTACGAAAGCACAATATA
CTTCAATGGCTAAAATGCGTATTTTGCAACCGAAAATGCAAGAAATGCGTGAACGTTTTGGAGATGATCGCCAACGTATG
AGCCAAGAAATGATGAAGCTTTATAAAGAGGAAAAAGTAAATCCACTTGGTGGTTGTTTGCCAATTCTTCTTCAAATGCC
AATTTTCATCGCATTATACTGGACGTTCTTAGAAGCCGTTGAATTACGTCATGCACCATTCTTTGGTTGGATCCAAGACT
TATCGGCACAAGATCCTTATTACATTCTCCCTATTTTAATGGGTATCTCAATGTTCTTGTTGCAAAAAATGTCTCCAACA
CCAGTAACTGACCCAACACAACAAAAAGTAATGAATTTTATGCCATTAGTTTTTATGTTCTTTTTCTTGTGGTTCCCATC
AGGCTTGGTATTATACTGGTTAGTATCTAACTTGATCACTATCGCCCAACAGCAATTAATTTATCGTGGATTAGAGAAAA
AAGGGTTGCATTCTCGTAAGAAATAG

Upstream 100 bases:

>100_bases
GTTGGCTTACGCTGAAACGTGTATTAAAATGCCATCCTTTAAACGCAGGTGGATTCGATCCTGTTCCACCAAAAACCAAT
AATAATGATGAGAAAAAATA

Downstream 100 bases:

>100_bases
TCACGAACAGGCAAAAAGAAAGGCACGGAATGTGCTTTCTTTATTATTTGATCTTAATATATTCTGCATTTTGTAGAGAT
AGAGTTTTTTTAGTAGAAAC

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQTRGRIITLENDVFRLKIDTL
GGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLIGKNGIDTRSGRAQYQIEGDNFKLAEGQESLSVPLLFEKDG
VTYQKIFVLKRGSYDLGVDYKIDNQSGQAIEVEPYGQLKHSIVESSGNVAMPTYTGGAYSSSETNYKKYSFSDMQDNNLS
IDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVTIPAGSQETITSSLWTGPKLQNQMATVANNL
DLTVDYGWAWFIAKPLFWLLTFIQGIVSNWGLAIICVTIVVKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRM
SQEMMKLYKEEKVNPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGISMFLLQKMSPT
PVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRGLEKKGLHSRKK

Sequences:

>Translated_541_residues
MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQTRGRIITLENDVFRLKIDTL
GGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLIGKNGIDTRSGRAQYQIEGDNFKLAEGQESLSVPLLFEKDG
VTYQKIFVLKRGSYDLGVDYKIDNQSGQAIEVEPYGQLKHSIVESSGNVAMPTYTGGAYSSSETNYKKYSFSDMQDNNLS
IDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVTIPAGSQETITSSLWTGPKLQNQMATVANNL
DLTVDYGWAWFIAKPLFWLLTFIQGIVSNWGLAIICVTIVVKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRM
SQEMMKLYKEEKVNPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGISMFLLQKMSPT
PVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRGLEKKGLHSRKK
>Mature_541_residues
MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQTRGRIITLENDVFRLKIDTL
GGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLIGKNGIDTRSGRAQYQIEGDNFKLAEGQESLSVPLLFEKDG
VTYQKIFVLKRGSYDLGVDYKIDNQSGQAIEVEPYGQLKHSIVESSGNVAMPTYTGGAYSSSETNYKKYSFSDMQDNNLS
IDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVTIPAGSQETITSSLWTGPKLQNQMATVANNL
DLTVDYGWAWFIAKPLFWLLTFIQGIVSNWGLAIICVTIVVKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRM
SQEMMKLYKEEKVNPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGISMFLLQKMSPT
PVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRGLEKKGLHSRKK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=558, Percent_Identity=54.3010752688172, Blast_Score=603, Evalue=1e-173,
Organism=Drosophila melanogaster, GI24662345, Length=192, Percent_Identity=28.6458333333333, Blast_Score=86, Evalue=7e-17,
Organism=Drosophila melanogaster, GI21356443, Length=192, Percent_Identity=28.6458333333333, Blast_Score=86, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 61240; Mature: 61240

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
TRGRIITLENDVFRLKIDTLGGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLI
CCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEEECCCC
GKNGIDTRSGRAQYQIEGDNFKLAEGQESLSVPLLFEKDGVTYQKIFVLKRGSYDLGVDY
CCCCCCCCCCCEEEEEECCCEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCEEE
KIDNQSGQAIEVEPYGQLKHSIVESSGNVAMPTYTGGAYSSSETNYKKYSFSDMQDNNLS
EECCCCCCEEEECCHHHHHHHHHHCCCCEEECEECCCCCCCCCCCCEEEECCCCCCCCEE
IDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVTIPAGSQETIT
EECCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCHHHHH
SSLWTGPKLQNQMATVANNLDLTVDYGWAWFIAKPLFWLLTFIQGIVSNWGLAIICVTIV
HHHCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRMSQEMMKLYKEEKVNPLGGCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
PILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGISMFLLQKMSPT
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCC
PVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRGLEKKGLHSRK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
K
C
>Mature Secondary Structure
MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
TRGRIITLENDVFRLKIDTLGGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLI
CCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEEECCCC
GKNGIDTRSGRAQYQIEGDNFKLAEGQESLSVPLLFEKDGVTYQKIFVLKRGSYDLGVDY
CCCCCCCCCCCEEEEEECCCEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCEEE
KIDNQSGQAIEVEPYGQLKHSIVESSGNVAMPTYTGGAYSSSETNYKKYSFSDMQDNNLS
EECCCCCCEEEECCHHHHHHHHHHCCCCEEECEECCCCCCCCCCCCEEEECCCCCCCCEE
IDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVTIPAGSQETIT
EECCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCHHHHH
SSLWTGPKLQNQMATVANNLDLTVDYGWAWFIAKPLFWLLTFIQGIVSNWGLAIICVTIV
HHHCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRMSQEMMKLYKEEKVNPLGGCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
PILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGISMFLLQKMSPT
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCC
PVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRGLEKKGLHSRK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA