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The map label for this gene is vapC

Identifier: 16272885

GI number: 16272885

Start: 1008185

End: 1008583

Strand: Reverse

Name: vapC

Synonym: HI0947

Alternate gene names: NA

Gene position: 1008583-1008185 (Counterclockwise)

Preceding gene: 16272886

Following gene: 16272884

Centisome position: 55.11

GC content: 36.84

Gene sequence:

>399_bases
GTGTTGAAATATATGCTTGATACTAACATTGTGATTTACGTGATTAAGCGTAGGCCATTGGAAATTCTTTCTCGCTTTAA
TCAAAATGCAGGAAAAATGTGCGTGAGTAGCATTACTGTGGCTGAACTCTATTATGGAGCTGAAAAAAGCGAATATCCCG
AAAGAAACATTGCGGTTATTGAAGATTTCTTATCACGCCTCACCATTTTAGATTACCAACCAAAGCATGCAGCTCATTTC
GGCAATATTAAAGCTGAACTCTCTAAACAAGGGAAATTGATTGGCGAAAATGATATTCATATAGCGGCTCATGCTCGTAG
TGAAGGGTTAATTCTGGTTAGTAACAATTTAAGAGAATTTGAGCGAGTTATAGCATTACGTACAGAAAATTGGGTGTAA

Upstream 100 bases:

>100_bases
ACCAATCTTGGGATAGTTTTTTCTTGAATGATCAAGCAGTTAGCGATGATTTTATGAATGAACGAGAAATTGCATTTCAA
CCAGAGCGTGAGGCTTTATA

Downstream 100 bases:

>100_bases
TTCATATCTAGGAATAATTATGTCAAACCTCAAACAACACAAACAAGCTTTGTTTTGCAACGATAACGAAGCCATTAACG
ATTATGAAACAGCGATGCAT

Product: virulence-associated protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MLKYMLDTNIVIYVIKRRPLEILSRFNQNAGKMCVSSITVAELYYGAEKSEYPERNIAVIEDFLSRLTILDYQPKHAAHF
GNIKAELSKQGKLIGENDIHIAAHARSEGLILVSNNLREFERVIALRTENWV

Sequences:

>Translated_132_residues
MLKYMLDTNIVIYVIKRRPLEILSRFNQNAGKMCVSSITVAELYYGAEKSEYPERNIAVIEDFLSRLTILDYQPKHAAHF
GNIKAELSKQGKLIGENDIHIAAHARSEGLILVSNNLREFERVIALRTENWV
>Mature_132_residues
MLKYMLDTNIVIYVIKRRPLEILSRFNQNAGKMCVSSITVAELYYGAEKSEYPERNIAVIEDFLSRLTILDYQPKHAAHF
GNIKAELSKQGKLIGENDIHIAAHARSEGLILVSNNLREFERVIALRTENWV

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC)

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y947_HAEIN (P71363)

Other databases:

- EMBL:   L42023
- PIR:   B64104
- RefSeq:   NP_439108.1
- ProteinModelPortal:   P71363
- GeneID:   950223
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0947
- TIGR:   HI_0947
- HOGENOM:   HBG705734
- OMA:   IKRRPIE
- ProtClustDB:   CLSK892389
- BioCyc:   HINF71421:HI_0947-MONOMER
- InterPro:   IPR002716
- InterPro:   IPR006596
- SMART:   SM00670

Pfam domain/function: PF01850 PIN

EC number: NA

Molecular weight: Translated: 15148; Mature: 15148

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYMLDTNIVIYVIKRRPLEILSRFNQNAGKMCVSSITVAELYYGAEKSEYPERNIAVI
CEEEEECCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
EDFLSRLTILDYQPKHAAHFGNIKAELSKQGKLIGENDIHIAAHARSEGLILVSNNLREF
HHHHHHHHCCCCCCCCHHHCCCHHHHHHCCCCEECCCCEEEEEECCCCCEEEEECCHHHH
ERVIALRTENWV
HHHHHHHCCCCC
>Mature Secondary Structure
MLKYMLDTNIVIYVIKRRPLEILSRFNQNAGKMCVSSITVAELYYGAEKSEYPERNIAVI
CEEEEECCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
EDFLSRLTILDYQPKHAAHFGNIKAELSKQGKLIGENDIHIAAHARSEGLILVSNNLREF
HHHHHHHHCCCCCCCCHHHCCCHHHHHHCCCCEECCCCEEEEEECCCCCEEEEECCHHHH
ERVIALRTENWV
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800