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The map label for this gene is nrfF

Identifier: 16272871

GI number: 16272871

Start: 992557

End: 993711

Strand: Reverse

Name: nrfF

Synonym: HI0934

Alternate gene names: 16272871

Gene position: 993711-992557 (Counterclockwise)

Preceding gene: 16272872

Following gene: 16272870

Centisome position: 54.3

GC content: 37.92

Gene sequence:

>1155_bases
ATGAAAAGTATATTAGATATTTTTACTCGCGGTTTTATTCAGGTTCAAAAAACAGTCTTTTTTGCAACCGCACTTTTATT
CGCATTTTCCTTGTTTACTCAAGCGGAAATGGTGGATACCTATCAATTTCAAAATCAAGATGATCGTACTCGCGCCGTAG
AGTTGGCAAAATCTTTACGCTGTCCACAATGTCAGAACCAAAATTTGGTGGAATCTAATTCTCCAATTGCTTATGACTTG
CGTCTTGAAGTGTACAAAATGGTGGATGAGGGCAAAAGCAATCAGCAAATTATCGATAAAATGACGGCTAGATTTGGTGA
TTTTGTGAATTACAAACCGCCATTCAAATGGAATACGGCGTTGTTATGGTTATTGCCAGTCGCCCTTTTAATTTTAGCTG
CAGTATTGCTTTATTTCTCAAATAGGAAAAAACAGTTTTCAGAAAAAGTGGTTGCACAACAACTAGAGAATGATGAAATA
ATTTCCCTCCCCTCAACCTTTGGCAGCTCCCCCCGCAAGCAAGGGGAGCCAAGTAAACTTTCTAAGGGAAAAGTGAATAG
CAAAATTTATTTTGTGCTTTTTACTTTACTCATCGCTATTCCAGCTACTTATTATTTTTCCCTTGATCGTTTTAGTCGTG
TTCAACAAGGCGAGCAATCGATGATTGAGCAACATAATCAAAATGTTGAAATGAATGATGAACACAAAAATGAAAATGTG
ATTGAGAAGCTCCAAAATAAACTGCGAACTGATCCGAATAATGCGGAAACTTGGCTTCAACTTGGGGAAGCCTATGTGCA
GAATAATGAATTTGATAGCGCGCTTGTGGCTTATTCTAATGCGGAAAAATTGTCGGGAAGTAAACCTAATATTTTAGGCT
TGGCAGCCACCGCACTTTATTATCAAGCAGGCCAGCAAATGACCCAAAAAGTCGAACAACTTTTGAATGAAGCTTTGGCA
AAAGATAAAAATGAAGTATCTAGTCTTTCTTTGTTGGCGACAATTGCCTTAGAAAATCGCCAATATCAACAAGCCGGTAT
GTATTTACAGCAGTTATTAGATTCAGGTAATGCGGCAGTGGATCGTCGTTCAGTTATTCAACGAATGAAGATGTTGGATT
TTTTACAACGTGGTGAAAAAGGACAAAATCCGTGA

Upstream 100 bases:

>100_bases
TGGATGAAAATGGTGTGATTCGTTATCGCCATTCTGGTTTATTGGATAAAGAAACTTGGCAAACGGTATTTTTGCCGAAA
ATTGAAGCATTGAAGAACAA

Downstream 100 bases:

>100_bases
GCCAATATTCTGAAAATATTATTATTGGTGCGGGTGCGGCAGGATTATTTTGTGCCGCACAATTGGCTAAGCTAGGCAAG
TCGGTAACAGTTTTCGACAA

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFTQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTQKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP

Sequences:

>Translated_384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFTQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTQKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP
>Mature_384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFTQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTQKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP

Specific function: Possible subunit of a heme lyase

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats

Homologues:

Organism=Escherichia coli, GI1788522, Length=338, Percent_Identity=26.3313609467456, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790512, Length=87, Percent_Identity=54.0229885057471, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1790513, Length=198, Percent_Identity=30.3030303030303, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NRFF_HAEIN (P44942)

Other databases:

- EMBL:   L42023
- PIR:   H64161
- RefSeq:   NP_439094.1
- ProteinModelPortal:   P44942
- GeneID:   949938
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0934
- NMPDR:   fig|71421.1.peg.900
- TIGR:   HI_0934
- HOGENOM:   HBG296581
- OMA:   VEMNDEH
- ProtClustDB:   CLSK808468
- BioCyc:   HINF71421:HI_0934-MONOMER
- InterPro:   IPR005616
- InterPro:   IPR017565
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10
- TIGRFAMs:   TIGR03147

Pfam domain/function: PF03918 CcmH

EC number: NA

Molecular weight: Translated: 43780; Mature: 43780

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: BINDING 61-61 BINDING 64-64

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFTQAEMVDTYQFQNQDDRTRAVELAKSLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTA
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
LLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEIISLPSTFGSSPRKQGEPSKL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCCCCCCCC
SKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALY
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCCHHHHHHHHHH
YQAGQQMTQKVEQLLNEALAKDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCH
DRRSVIQRMKMLDFLQRGEKGQNP
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFTQAEMVDTYQFQNQDDRTRAVELAKSLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDKMTARFGDFVNYKPPFKWNTA
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
LLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEIISLPSTFGSSPRKQGEPSKL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCCCCCCCC
SKGKVNSKIYFVLFTLLIAIPATYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNENV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IEKLQNKLRTDPNNAETWLQLGEAYVQNNEFDSALVAYSNAEKLSGSKPNILGLAATALY
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCCHHHHHHHHHH
YQAGQQMTQKVEQLLNEALAKDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCH
DRRSVIQRMKMLDFLQRGEKGQNP
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800