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The map label for this gene is ycjD [C]

Identifier: 16272862

GI number: 16272862

Start: 984000

End: 984365

Strand: Reverse

Name: ycjD [C]

Synonym: HI0925

Alternate gene names: 16272862

Gene position: 984365-984000 (Counterclockwise)

Preceding gene: 16272863

Following gene: 16272861

Centisome position: 53.79

GC content: 35.52

Gene sequence:

>366_bases
ATGCAACCCTATGAAAAATACTTAAAGCTGAATTCGCAGAAACTGCGAGCGGATCAAACGGATACAGAAAGAAAGCTATG
GCAACGCATCAATCGAGATCAATTATTAGGATTTCGATTTAATCGACAAAAGCCACTTTTAAGTTATATCGTTGATTTTT
ATTGTGCAAAGACAAAGCTGATTATTGAATTAGATGGTAGTCAGCACTATAAACCTGATTATCAGGAAAAAGATGCATTG
CGAGATGCAGAATTAAATTCACTTGGTTTTACAGTGATGCGGTTTAGCAATGATGAAGTCATGCGTGAAATTGAAGCGGT
AGTAGAGCAGATTTATTTGTTTTTAGAGAATGTAAGGACTGATTGA

Upstream 100 bases:

>100_bases
GCATTCCTGCATTGTTATTACCAAATGGCGATGTTGTTTTAGACCTATCAAAGTTAAAAGTAATTTTTTAAGTTTTGGGA
AAGATAGAACAGCAGTTTTC

Downstream 100 bases:

>100_bases
GTATGAGGTTGGATTAACCTCTGCCACAAACGCTTGCGTTTGAACGTTGCTTTAGCAACGGCACGAAGTGCGAGCGAAGC
GAGTAAATCTCCCCTACCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MQPYEKYLKLNSQKLRADQTDTERKLWQRINRDQLLGFRFNRQKPLLSYIVDFYCAKTKLIIELDGSQHYKPDYQEKDAL
RDAELNSLGFTVMRFSNDEVMREIEAVVEQIYLFLENVRTD

Sequences:

>Translated_121_residues
MQPYEKYLKLNSQKLRADQTDTERKLWQRINRDQLLGFRFNRQKPLLSYIVDFYCAKTKLIIELDGSQHYKPDYQEKDAL
RDAELNSLGFTVMRFSNDEVMREIEAVVEQIYLFLENVRTD
>Mature_121_residues
MQPYEKYLKLNSQKLRADQTDTERKLWQRINRDQLLGFRFNRQKPLLSYIVDFYCAKTKLIIELDGSQHYKPDYQEKDAL
RDAELNSLGFTVMRFSNDEVMREIEAVVEQIYLFLENVRTD

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_1162

Homologues:

Organism=Escherichia coli, GI1787546, Length=105, Percent_Identity=40.9523809523809, Blast_Score=79, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y925_HAEIN (P44075)

Other databases:

- EMBL:   L42023
- PIR:   C64016
- RefSeq:   NP_439085.1
- ProteinModelPortal:   P44075
- GeneID:   950812
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0925
- TIGR:   HI_0925
- HOGENOM:   HBG691556
- OMA:   YEPDYQE
- ProtClustDB:   CLSK892387
- BioCyc:   HINF71421:HI_0925-MONOMER
- InterPro:   IPR007569
- InterPro:   IPR011335

Pfam domain/function: PF04480 DUF559; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14589; Mature: 14589

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPYEKYLKLNSQKLRADQTDTERKLWQRINRDQLLGFRFNRQKPLLSYIVDFYCAKTKL
CCHHHHHHHCCCHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHCCCEE
IIELDGSQHYKPDYQEKDALRDAELNSLGFTVMRFSNDEVMREIEAVVEQIYLFLENVRT
EEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
D
C
>Mature Secondary Structure
MQPYEKYLKLNSQKLRADQTDTERKLWQRINRDQLLGFRFNRQKPLLSYIVDFYCAKTKL
CCHHHHHHHCCCHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHCCCEE
IIELDGSQHYKPDYQEKDALRDAELNSLGFTVMRFSNDEVMREIEAVVEQIYLFLENVRT
EEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800