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The map label for this gene is smpA [H]

Identifier: 16272779

GI number: 16272779

Start: 887872

End: 888441

Strand: Reverse

Name: smpA [H]

Synonym: HI0838

Alternate gene names: 16272779

Gene position: 888441-887872 (Counterclockwise)

Preceding gene: 30995406

Following gene: 16272778

Centisome position: 48.55

GC content: 36.67

Gene sequence:

>570_bases
ATGGGATCCTATGACAGATACCCTAACCATCAAAGGCTTACCACCAAATTTAAAAGATCAATTACAAAAGGCTTTAAAAT
CAGAGAATTAATTTGGAAATACACCCAATTTTGGATATTATTTGACAGAACTTTTGCACAAATTAAGGTAAAGAAAATGC
AAGTTAAAACACTTTTAGGCGCAACCTTTTTAGCATTAAGCCTCGCTTCTTGTTCCACCGTTGAAAAAGTTGTATATCGA
ATTGATGTACCGCAAGGCAACTATTTAGAGGCGACTACCGTTGCGCAAGTTAAAGAAGGAATGACTGCTCAACAAGTACA
ATATTTGTTGGGTACGCCAGTATTAGTCGATCCTTATAATAGTCAGACTTGGTACTATGTGTTCTTACAACAACGTGCCT
ATGAAACGCCAGTTCAACATACTTTCACAGTAAAATTTGATCAACGTGGGATTGTGACAGAAACCCATCTTGATAAACCT
TTACCACAGGTTTCACAACAAGGCGAAAATAACACCATTATTGAAACAGGTGAGAAACCAAAATCAAGCTGGTGGAAATT
CTGGAAATAA

Upstream 100 bases:

>100_bases
CACCAATACGTTCAACATTGAAATCGCTAACAAAATTCTCTGGGTCAGGAAAGGGCGTTACCCTAAGTTTTGATGCGGAA
TTATTGAATACACGTATTCA

Downstream 100 bases:

>100_bases
TCTTTTTATTTTCACCACACTACAATAAGAATAATTGGTAAAAGGAATCTCCAATGTCAAAACTCTTACTCGTTGATGAT
GATATTGAATTAACTGAACT

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MGSYDRYPNHQRLTTKFKRSITKGFKIRELIWKYTQFWILFDRTFAQIKVKKMQVKTLLGATFLALSLASCSTVEKVVYR
IDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYNSQTWYYVFLQQRAYETPVQHTFTVKFDQRGIVTETHLDKP
LPQVSQQGENNTIIETGEKPKSSWWKFWK

Sequences:

>Translated_189_residues
MGSYDRYPNHQRLTTKFKRSITKGFKIRELIWKYTQFWILFDRTFAQIKVKKMQVKTLLGATFLALSLASCSTVEKVVYR
IDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYNSQTWYYVFLQQRAYETPVQHTFTVKFDQRGIVTETHLDKP
LPQVSQQGENNTIIETGEKPKSSWWKFWK
>Mature_188_residues
GSYDRYPNHQRLTTKFKRSITKGFKIRELIWKYTQFWILFDRTFAQIKVKKMQVKTLLGATFLALSLASCSTVEKVVYRI
DVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYNSQTWYYVFLQQRAYETPVQHTFTVKFDQRGIVTETHLDKPL
PQVSQQGENNTIIETGEKPKSSWWKFWK

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=109, Percent_Identity=48.6238532110092, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 22144; Mature: 22013

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSYDRYPNHQRLTTKFKRSITKGFKIRELIWKYTQFWILFDRTFAQIKVKKMQVKTLLG
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHH
ATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYN
HHHHHHHHHHHHHHHHHHEEEECCCCCEECHHHHHHHHHCCCHHHHHHHHCCCEEEECCC
SQTWYYVFLQQRAYETPVQHTFTVKFDQRGIVTETHLDKPLPQVSQQGENNTIIETGEKP
CCEEEEEEEECHHCCCCCCEEEEEEECCCCCEEHHHCCCCCCHHHHCCCCCCEEECCCCC
KSSWWKFWK
CHHHHCCCC
>Mature Secondary Structure 
GSYDRYPNHQRLTTKFKRSITKGFKIRELIWKYTQFWILFDRTFAQIKVKKMQVKTLLG
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHH
ATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYN
HHHHHHHHHHHHHHHHHHEEEECCCCCEECHHHHHHHHHCCCHHHHHHHHCCCEEEECCC
SQTWYYVFLQQRAYETPVQHTFTVKFDQRGIVTETHLDKPLPQVSQQGENNTIIETGEKP
CCEEEEEEEECHHCCCCCCEEEEEEECCCCCEEHHHCCCCCCHHHHCCCCCCEEECCCCC
KSSWWKFWK
CHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]