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The map label for this gene is xerC [H]

Identifier: 16272618

GI number: 16272618

Start: 718776

End: 719663

Strand: Reverse

Name: xerC [H]

Synonym: HI0676

Alternate gene names: 16272618

Gene position: 719663-718776 (Counterclockwise)

Preceding gene: 16272619

Following gene: 16272616

Centisome position: 39.32

GC content: 40.88

Gene sequence:

>888_bases
ATGCTAACAGCGTTAAATCGTTATTGGGATTATTTGCGGATTGAACGCCAAATGAGTCCTCACACAATCACTAATTATCA
ACATCAGCTTGATGCCACCATCAAAATCTTAGCGCAACAAGATATTCATTCTTGGACACAAGTGACGCCTAGCGTGGTGC
GCTTTATTTTAGCGGAAAGCAAAAAACAAGGCTTAAAAGAAAAAAGCTTGGCTTTGCGTTTATCTGCATTGCGTCGATTT
CTCAGTTTTTTAGTGCAACAAGGCGAATTAAAAGTAAATCCTGCCACAGGCATTTCTGCACCGAAACAAGGCAGGCATTT
ACCGAAAAATATGGATGGCGAGCAAGTTCAACAATTGCTTGCCAACGATAGCAAAGAGCCAATTGATATTCGTGATCGTG
CTATTTTGGAATTAATGTATAGTTCAGGTTTGCGTTTATCTGAATTACAAGGCTTAGATTTAAACAGCATTAATACCCGT
GTGCGGGAAGTACGCGTTATTGGAAAAGGTAACAAAGAACGAGTTGTGCCGTTTGGGCGTTACGCTTCGCATGCCATTCA
AGAATGGTTAAAAGTGCGGGCATTATTTAACCCAAAAGATGAGGCATTATTTGTTAGCCAGCTTGGAAATCGCATTTCTC
ATCGAGCTATTCAAAAACGTTTAGAAACTTGGGGTATTCGTCAAGGCTTAAATAGCCATCTTAATCCGCACAAATTACGT
CATTCTTTTGCGACGCATATGTTGGAAGCCAGTTCTGATTTACGCGCCGTGCAAGAATTGCTTGGGCATAGCAACCTTTC
CACCACACAAATTTATACTCACTTAAATTTCCAACATCTGGCAGAAGTGTACGATCAGGCGCACCCAAGAGCGAAACGAA
AAAAATAA

Upstream 100 bases:

>100_bases
ATCGTTTAGTGGCAGAATTAGCGCAAAATCAATATTCAATGTTGGAATCGGAAGGGTTTAAATTGAACCCAAAAGAACGT
TTATTTGAATTGAGTTTGTC

Downstream 100 bases:

>100_bases
AGGAGCGGTTAAAACAAAAGAAATTTTAACCGCACTTTTAATTAATATTAGATTACTTCGCAGGAATATCGGCAAGTACT
CTTGTCAATAAATCCCAATA

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLSALRRF
LSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTR
VREVRVIGKGNKERVVPFGRYASHAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLR
HSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK

Sequences:

>Translated_295_residues
MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLSALRRF
LSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTR
VREVRVIGKGNKERVVPFGRYASHAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLR
HSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK
>Mature_295_residues
MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLSALRRF
LSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTR
VREVRVIGKGNKERVVPFGRYASHAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLR
HSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=293, Percent_Identity=59.0443686006826, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=36.9491525423729, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1790768, Length=183, Percent_Identity=28.9617486338798, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790767, Length=182, Percent_Identity=26.3736263736264, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33936; Mature: 33936

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAES
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLL
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR
HCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCCCHH
YASHAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
HSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAES
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLL
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR
HCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCCCHH
YASHAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
HSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA