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The map label for this gene is rbsC

Identifier: 16272447

GI number: 16272447

Start: 519961

End: 520932

Strand: Direct

Name: rbsC

Synonym: HI0503

Alternate gene names: 16272447

Gene position: 519961-520932 (Clockwise)

Preceding gene: 16272446

Following gene: 16272448

Centisome position: 28.41

GC content: 37.14

Gene sequence:

>972_bases
ATGATGAAAAATGAAACATCTAATTTTCAAATAGGAAGATTTTTGATTGAACAGCGTTCTTTTATTGCATTGATTATTCT
TATCGCGATTGTATCAATGATTAATCCTGATTTTTTTAGCGTAGATAATATTTTGAATATTTTACGCCAAACTTCGGTTA
ATGCGATTATTGCAGTGGGTATGACTTTCGTTATTTTAATTGCAGGTATAGATCTTTCTGTTGGATCTGTATTGGCATTG
ACAGGTGCAATCGCCGCTTCAATGGTGAGTATTGAATTGCCTATTTTTTTAGTCATTCCTGTGGTTTTATTGATTGGAAC
ACTTCTTGGTGGCATAAGTGGTGTAATTGTGGCAAAGGGAAAAGTTCAGGCTTTTATTGCTACCTTGGTTACCATGACCT
TACTGCGTGGTATAACAATGGTTTATACAGATGGTCGTCCTATTACGACAGGTTTTTCGGATAATGCTGATCTATTTGCT
AGCATTGGTACAGGCTATGTTTTAGGTATCCCAGTACCAATTTGGATTATGAGTATCGTGTTTGCGGTTGCTTGGTATAT
TTTAAAAGACACACCAATCGGTCGCTATATTTATGCTTTAGGTGGAAATGAGGCAGCGACCCAACTTTCTGGTATTAACG
TCAATAAAATCAAAGTATTTGTTTTTGCGGTGAGTGGATTTCTTTCTGCGCTGGCGGGTTTAATTGTAACTTCACGTTTA
TCTTCCGCTCAACCCACTGCTGGCGTATCTTATGAATTAGATGCAATTGCCGCCGTGGTAGTCGGTGGAACCAGTTTGAT
GGGGGGGAAAGGTCGTGTAATGGGAACTCTCATCGGTGCATTAATCATCGGATTTTTAAACAATGCATTAAATTTATTAG
ATATTTCATCTTACTATCAAATGATAGCAAAAGCGTTGGTTATTTTGGTTGCTGTTTTAGCCGATAACTATCTTGGTACA
AAAAAACTGTAA

Upstream 100 bases:

>100_bases
GGTAATGCGTGAAGGTAAAATTAGTGCAGAATTTTCTCGTGAAGAGGCAACACAAGAAAAGTTATTAGCAGCAGCTATTG
GTAAATAAGAGTAGGTAAGT

Downstream 100 bases:

>100_bases
CTCACTTTAAGGAGAAACTATGAAAAAACTAACCGCACTTACTTCTGCTGTATTATTAGGTTTGGCTGTTTCTAGCTCTG
CTTCTGCGCAAGACACAATC

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MMKNETSNFQIGRFLIEQRSFIALIILIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLAL
TGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFA
SIGTGYVLGIPVPIWIMSIVFAVAWYILKDTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRL
SSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGT
KKL

Sequences:

>Translated_323_residues
MMKNETSNFQIGRFLIEQRSFIALIILIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLAL
TGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFA
SIGTGYVLGIPVPIWIMSIVFAVAWYILKDTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRL
SSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGT
KKL
>Mature_323_residues
MMKNETSNFQIGRFLIEQRSFIALIILIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLAL
TGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFA
SIGTGYVLGIPVPIWIMSIVFAVAWYILKDTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRL
SSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGT
KKL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily

Homologues:

Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=67.986798679868, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=39.2405063291139, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=36.9565217391304, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI145693152, Length=316, Percent_Identity=34.4936708860759, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=37.6731301939058, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=36.1702127659575, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=35.474006116208, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=36.4661654135338, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=31.5972222222222, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787794, Length=301, Percent_Identity=30.5647840531561, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSC_HAEIN (P44736)

Other databases:

- EMBL:   L42023
- PIR:   I64072
- RefSeq:   NP_438661.1
- GeneID:   949666
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0503
- TIGR:   HI_0503
- HOGENOM:   HBG663180
- OMA:   GSPINTG
- ProtClustDB:   PRK09512
- BioCyc:   HINF71421:HI_0503-MONOMER
- InterPro:   IPR001851

Pfam domain/function: PF02653 BPD_transp_2

EC number: NA

Molecular weight: Translated: 33969; Mature: 33969

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc91cb9c)-; HASH(0xcee25d4)-; HASH(0xcba665c)-; HASH(0xcdb35dc)-; HASH(0xc8b2078)-; HASH(0xcee17f8)-; HASH(0xcbe504c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKNETSNFQIGRFLIEQRSFIALIILIAIVSMINPDFFSVDNILNILRQTSVNAIIAVG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MTFVILIAGIDLSVGSVLALTGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKG
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECC
KVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFASIGTGYVLGIPVPIWIMSIV
HHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCHHHEECCCCEEEECCHHHHHHHHH
FAVAWYILKDTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRL
HHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHC
SSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQ
CCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIAKALVILVAVLADNYLGTKKL
HHHHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MMKNETSNFQIGRFLIEQRSFIALIILIAIVSMINPDFFSVDNILNILRQTSVNAIIAVG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MTFVILIAGIDLSVGSVLALTGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKG
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECC
KVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFASIGTGYVLGIPVPIWIMSIV
HHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCHHHEECCCCEEEECCHHHHHHHHH
FAVAWYILKDTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRL
HHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHC
SSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQ
CCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIAKALVILVAVLADNYLGTKKL
HHHHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800