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The map label for this gene is rbsD [H]

Identifier: 16272445

GI number: 16272445

Start: 518034

End: 518453

Strand: Direct

Name: rbsD [H]

Synonym: HI0501

Alternate gene names: 16272445

Gene position: 518034-518453 (Clockwise)

Preceding gene: 30995380

Following gene: 16272446

Centisome position: 28.31

GC content: 36.9

Gene sequence:

>420_bases
ATGAAAAAAACAGCTTTATTGAATGCGCAACTTTCGCATTGCATTGCTACACTTGGTCATACGGAAAGTTTGACGATTTG
CGATGCGGGACTTCCAATTCCATTAAGTGTGGAACGTATCGATCTCGCATTAACTGCGGGTGTACCAAGTTTTCTACAAA
CGTTGAATGTAGTAACGAATGAAATGTATGTTGAACGCGTTGTTATTGCAGAAGAAATTAAAGAAAAAAATCCAGAAATA
TTGACCGCACTTTTAACACAACTTCAAAAACTTGAAAGCCATCAGGGTAATCAAATACAAGTGGAATTTGTATCGCACGA
AACTTTTAAAAAATTCACCCTCGAAAGTAAAGCTATTGTTCGTACTGGCGAATGTTCACCTTATGCCAATGTGATTTTAT
ATTCTGGCGTGCCATTTTAA

Upstream 100 bases:

>100_bases
TGATCAATATCCCAAATTTGAAATTTCTTAGTTGTTTTTCTATTTTTGTTATCTATATTTGTCTTATCGAAACGTTTCGA
TAACAAAAAGGAGCTTTTAG

Downstream 100 bases:

>100_bases
TCAGGGTGAAATTATGGAAACTTTACTCAAAATTAGTGGTGTTGATAAATCATTTCCAGGTGTGAAAGCCTTGAATAATG
CCTGTTTATCTGTTTACGCT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKTALLNAQLSHCIATLGHTESLTICDAGLPIPLSVERIDLALTAGVPSFLQTLNVVTNEMYVERVVIAEEIKEKNPEI
LTALLTQLQKLESHQGNQIQVEFVSHETFKKFTLESKAIVRTGECSPYANVILYSGVPF

Sequences:

>Translated_139_residues
MKKTALLNAQLSHCIATLGHTESLTICDAGLPIPLSVERIDLALTAGVPSFLQTLNVVTNEMYVERVVIAEEIKEKNPEI
LTALLTQLQKLESHQGNQIQVEFVSHETFKKFTLESKAIVRTGECSPYANVILYSGVPF
>Mature_139_residues
MKKTALLNAQLSHCIATLGHTESLTICDAGLPIPLSVERIDLALTAGVPSFLQTLNVVTNEMYVERVVIAEEIKEKNPEI
LTALLTQLQKLESHQGNQIQVEFVSHETFKKFTLESKAIVRTGECSPYANVILYSGVPF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=58.9928057553957, Blast_Score=182, Evalue=9e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15339; Mature: 15339

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALLNAQLSHCIATLGHTESLTICDAGLPIPLSVERIDLALTAGVPSFLQTLNVVTN
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHH
EMYVERVVIAEEIKEKNPEILTALLTQLQKLESHQGNQIQVEFVSHETFKKFTLESKAIV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCEE
RTGECSPYANVILYSGVPF
ECCCCCCCCCEEEECCCCC
>Mature Secondary Structure
MKKTALLNAQLSHCIATLGHTESLTICDAGLPIPLSVERIDLALTAGVPSFLQTLNVVTN
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHH
EMYVERVVIAEEIKEKNPEILTALLTQLQKLESHQGNQIQVEFVSHETFKKFTLESKAIV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCEE
RTGECSPYANVILYSGVPF
ECCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA