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The map label for this gene is ycfD [C]

Identifier: 16272345

GI number: 16272345

Start: 417353

End: 418567

Strand: Direct

Name: ycfD [C]

Synonym: HI0396

Alternate gene names: 16272345

Gene position: 417353-418567 (Clockwise)

Preceding gene: 16272344

Following gene: 16272346

Centisome position: 22.8

GC content: 38.68

Gene sequence:

>1215_bases
ATGACCGCACTTTCATCTGTTGATTTTTGTTTACCTGAACATATCACGCCAGAAATTTTTCTACGTGATTATTGGCAGAA
AAAGCCACTTGTGATTCGGAACGGTTTGCCTGAAATCGTTGGGCAGTTTGAGCCACAAGATATTATTGAGCTCGCGCAAA
ATGAAGATGTGACAGCTCGTTTAGTGAAGACATTTTCTGATGATGATTGGAAAGTTTTTTTTAGTCCTTTGAGCGAAAAG
GATTTCCAAAAATTGCCAGAAAAATGGTCGGTGTTAGTTCAAAATTTGGAGCAATGGTCGCCTGAATTAGGACAACTTTG
GAACAAATTTGGCTTTATTCCTCAATGGCAACGTGACGACATTATGGTGTCTTACGCACCGAAAGGAGGTTCTGTCGGTA
AGCATTATGATGAATATGATGTATTTTTAGTGCAAGGCTATGGTCATCGTCGTTGGCAAGTGGGTAAATGGTGTGATGCA
AGCACTGAATTTAAACCCAATCAATCGATCCGAATTTTTGACGATATGGGCGAATTAGTCATTGATGAAGTGATGAATCC
TGGGGATATTTTGTATATTCCAGCCCGTATGGCGCATTATGGCGTGGCTGAAGATGATTGTTTAACCTTTTCTTTTGGCT
TGCGTTATCCAAATTTAAGCAATTTGATTGATGGCATAAGCAAAGGTTTTTGTCATCAAGATCCTGATTTGAATTTAAGC
GAGTTTGATTTACCGCTACGTTTAAGCCAGTCTGAACAACGTACAGGTAAACTTGCAGATGAAAATATTCAAGCGATGAA
ACAGCTTTTATTAGATAAATTGGCTCATTCAGAAGCTTTTGATACGTTATTTAAACAAGCAGTGGCGAGTGCGGTAAGTT
CTCGTCGTTATGAGTTATTGGTTTCTGATGAAATGTGCGATCCTGATGAAGTGCGGTCAATTTTAGAAGAAGATGGCGCA
TTCCTTTCTCAAGACAACAATTGTAAATTGCTTTATACCGAAAATCCGCTGCGAATTTATGCGAATGGCGAGTGGTTAGA
TGAACTTAATATAATTGAGAGCGAAGTATTGAAACGTTTATCTGATGGCGAAAGTTTAGATTGGGCGTTTTTATCTGATT
TAGCCAATAAAACAGAAGATCCTGAAACCTCAATGGATTTGTTGTTGGATTCCATTTGTAACTGGGTTGATGATGGGTGG
GCGTTAATTGAATAA

Upstream 100 bases:

>100_bases
TTGAAATTTATCGTCCATTACTTGCAGATCCGAAAGAAATTCGCCGTAAGCGTGCAGCAGAGCAAGCTGCAGCCAAAGAC
AAAGAAAAAGGAGCTTAAAA

Downstream 100 bases:

>100_bases
TATGTCAGACAATATTTATTCCGTCTCTCAACTGAATTCTGCCGCGCGTCAGATGCTTGAGGGTAATTTTTGCCAAATTT
GGCTAACGGGGGAAATTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTALSSVDFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTARLVKTFSDDDWKVFFSPLSEK
DFQKLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDDIMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDA
STEFKPNQSIRIFDDMGELVIDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDGISKGFCHQDPDLNLS
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAVASAVSSRRYELLVSDEMCDPDEVRSILEEDGA
FLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRLSDGESLDWAFLSDLANKTEDPETSMDLLLDSICNWVDDGW
ALIE

Sequences:

>Translated_404_residues
MTALSSVDFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTARLVKTFSDDDWKVFFSPLSEK
DFQKLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDDIMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDA
STEFKPNQSIRIFDDMGELVIDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDGISKGFCHQDPDLNLS
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAVASAVSSRRYELLVSDEMCDPDEVRSILEEDGA
FLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRLSDGESLDWAFLSDLANKTEDPETSMDLLLDSICNWVDDGW
ALIE
>Mature_403_residues
TALSSVDFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTARLVKTFSDDDWKVFFSPLSEKD
FQKLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDDIMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDAS
TEFKPNQSIRIFDDMGELVIDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDGISKGFCHQDPDLNLSE
FDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAVASAVSSRRYELLVSDEMCDPDEVRSILEEDGAF
LSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRLSDGESLDWAFLSDLANKTEDPETSMDLLLDSICNWVDDGWA
LIE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain

Homologues:

Organism=Escherichia coli, GI87081836, Length=332, Percent_Identity=31.6265060240964, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y396_HAEIN (P44683)

Other databases:

- EMBL:   L42023
- PIR:   A64151
- RefSeq:   NP_438558.1
- ProteinModelPortal:   P44683
- GeneID:   950708
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0396
- TIGR:   HI_0396
- HOGENOM:   HBG560300
- OMA:   VQGPFED
- ProtClustDB:   CLSK869992
- BioCyc:   HINF71421:HI_0396-MONOMER
- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347
- Gene3D:   G3DSA:2.60.120.10
- PANTHER:   PTHR13096
- SMART:   SM00558

Pfam domain/function: PF08007 Cupin_4

EC number: NA

Molecular weight: Translated: 46420; Mature: 46288

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS51184 JMJC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSSVDFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTAR
CCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHCCCCHHHH
LVKTFSDDDWKVFFSPLSEKDFQKLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDD
HHHHHCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
IMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDASTEFKPNQSIRIFDDMGELV
EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHH
IDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDGISKGFCHQDPDLNLS
HHHHCCCCCEEEECHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAVASAVSSRRYELL
HCCCCEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VSDEMCDPDEVRSILEEDGAFLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRL
ECCCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHH
SDGESLDWAFLSDLANKTEDPETSMDLLLDSICNWVDDGWALIE
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure 
TALSSVDFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTAR
CCCCCCCHHCCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHCCCCHHHH
LVKTFSDDDWKVFFSPLSEKDFQKLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDD
HHHHHCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
IMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDASTEFKPNQSIRIFDDMGELV
EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHH
IDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDGISKGFCHQDPDLNLS
HHHHCCCCCEEEECHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAVASAVSSRRYELL
HCCCCEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VSDEMCDPDEVRSILEEDGAFLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRL
ECCCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHH
SDGESLDWAFLSDLANKTEDPETSMDLLLDSICNWVDDGWALIE
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023