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The map label for this gene is ybbI [C]

Identifier: 16272248

GI number: 16272248

Start: 328070

End: 328456

Strand: Direct

Name: ybbI [C]

Synonym: HI0293

Alternate gene names: 16272248

Gene position: 328070-328456 (Clockwise)

Preceding gene: 16272242

Following gene: 16272250

Centisome position: 17.93

GC content: 36.95

Gene sequence:

>387_bases
ATGAATATTAGTGAAGCCGCAAAATTAGTAGGTTTATCTACAAAACAAATCCGTGATTATGAAAAAATGGGGTTAATTAA
ACCCGCTGTTCGCAGTTTGTCAGGCTATCGAAATTATGGAGAAAGTGATTTAGAAAGGTTGCATTTTATTCGACACTCAC
GCAATGTTGGGTTTTCGTTACATCAAATCGCACAATTATTAGCACTACAAGATAATCCTAAGCGTAGCTGCCGAGAAGTG
AAAGTGCTAACTGCTCAACATATTGCGACATTAAATCAACAAATAGAACAGTTACAAAAAATGGTACAAAAATTGCAGCA
CTGGCACGACAGTTGTCAGGGCAATGACAACCCTGAATGTTTAATTTTGAATGGCTTGAACGGATAA

Upstream 100 bases:

>100_bases
TATGTTTAATGTGATAGTTTTCATTTTTACTCCTTGTTAGTTGTTTTATTGATGGTTAAACTATAAACCTTTACATAAGG
TTAAGGTCAAGAAGTTTTTT

Downstream 100 bases:

>100_bases
GTGAAAAGTGCGGTTAATATTCCCAGCTTTCTGGATCGACACCTAATTCACGCATAAGCACTTTGGCATCTTCAGGGATT
TCATCATTACGCTCTTTCAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNISEAAKLVGLSTKQIRDYEKMGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSLHQIAQLLALQDNPKRSCREV
KVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPECLILNGLNG

Sequences:

>Translated_128_residues
MNISEAAKLVGLSTKQIRDYEKMGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSLHQIAQLLALQDNPKRSCREV
KVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPECLILNGLNG
>Mature_128_residues
MNISEAAKLVGLSTKQIRDYEKMGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSLHQIAQLLALQDNPKRSCREV
KVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPECLILNGLNG

Specific function: Could be a copper-dependent transcriptional activator of the ATPase HI_0290

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786695, Length=128, Percent_Identity=39.84375, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1789687, Length=129, Percent_Identity=37.984496124031, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y293_HAEIN (P44617)

Other databases:

- EMBL:   L42023
- PIR:   I64059
- RefSeq:   NP_438460.1
- ProteinModelPortal:   P44617
- SMR:   P44617
- GeneID:   949535
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0293
- NMPDR:   fig|71421.1.peg.275
- TIGR:   HI_0293
- HOGENOM:   HBG710951
- OMA:   ACHGDDR
- ProtClustDB:   CLSK892364
- BioCyc:   HINF71421:HI_0293-MONOMER
- GO:   GO:0005737
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358
- PRINTS:   PR00040
- SMART:   SM00422

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 14589; Mature: 14589

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00552 HTH_MERR_1; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISEAAKLVGLSTKQIRDYEKMGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSL
CCHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH
HQIAQLLALQDNPKRSCREVKVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPEC
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LILNGLNG
EEEECCCC
>Mature Secondary Structure
MNISEAAKLVGLSTKQIRDYEKMGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSL
CCHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH
HQIAQLLALQDNPKRSCREVKVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPEC
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LILNGLNG
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800