Click here to switch to the map view.

The map label for this gene is kdkA [H]

Identifier: 16272218

GI number: 16272218

Start: 290110

End: 290835

Strand: Reverse

Name: kdkA [H]

Synonym: HI0260.1

Alternate gene names: 16272218

Gene position: 290835-290110 (Counterclockwise)

Preceding gene: 16272223

Following gene: 16272217

Centisome position: 15.89

GC content: 38.15

Gene sequence:

>726_bases
ATGCACCAATTCCAACAAGATAACCAATATTTTATCTTTAATTTTGACCGCACTTTTGAGCAAGCAACCGAGTTTTTCCA
AGCGGAATTTTGGCAAAAACAAGAACGAGTGATAGGAAGTGCAAAAGGTCGAGGCATCACTTATTTTTTGCAAACTGAAG
ATTGGTTTGGTGTAAATTGTGCGTTGCGTCATTATTATCGCGGCGGACTTTGGGGTAAACTGAACAAAGATCGTTATCGT
TTTTCTGCTCTTGAAACTACCCGTAGTTTTGCTGAGTTTCATTTGTTGCAACGTTTGTATGAAGCGGGGTTACCTGTGCC
TAAACCCATTGCCGCACGTATTCAAAAAGGCAAGTTAGGTATTTGCTATCAAGCGGATATTTTGACGGAAAAAATCGAAA
ACGCGCAGGATTTAACCGCACTTTTACAAACACAAACATTGCCAAAAGAAACTTGGATGCAAATTGGTCGTTTGATTCGA
AAACTACATGATTTACAGATTTGCCATACAGACTTGAATGCACATAATATTTTGCTTCAACAAACTGAACAAGGGCAAAA
ATGTTGGTTACTGGATTTTGATAAGTGCGGCGAAAAATCTGCAGATTTTTGGAAAGTGCAAAATCTGAACCGTTTAAAAC
GTTCCTTCGAAAAAGAAGTTGGACGAATGAATATTCAATTTACCGAGCAAAACTGGGCTGATTTAACGTCAGCTTATCAT
CAATAA

Upstream 100 bases:

>100_bases
TGGAGCTTCGGTAAAAAGTGGCATTGACGTTCCTTTATCATTTAATTTGTGCTTATTTTAAAGTAGAATAAGTCCATTTT
CTATTCATAACAACGTTCCA

Downstream 100 bases:

>100_bases
AAGGACTAATTATGAAACAAAAAATCGTACTTGCTACAGGCAATAAAGGAAAAGTAAAAGAAATGGCTGATGTCCTATCT
GATTTTGGCTTTGAAGTGAT

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MHQFQQDNQYFIFNFDRTFEQATEFFQAEFWQKQERVIGSAKGRGITYFLQTEDWFGVNCALRHYYRGGLWGKLNKDRYR
FSALETTRSFAEFHLLQRLYEAGLPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKETWMQIGRLIR
KLHDLQICHTDLNAHNILLQQTEQGQKCWLLDFDKCGEKSADFWKVQNLNRLKRSFEKEVGRMNIQFTEQNWADLTSAYH
Q

Sequences:

>Translated_241_residues
MHQFQQDNQYFIFNFDRTFEQATEFFQAEFWQKQERVIGSAKGRGITYFLQTEDWFGVNCALRHYYRGGLWGKLNKDRYR
FSALETTRSFAEFHLLQRLYEAGLPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKETWMQIGRLIR
KLHDLQICHTDLNAHNILLQQTEQGQKCWLLDFDKCGEKSADFWKVQNLNRLKRSFEKEVGRMNIQFTEQNWADLTSAYH
Q
>Mature_241_residues
MHQFQQDNQYFIFNFDRTFEQATEFFQAEFWQKQERVIGSAKGRGITYFLQTEDWFGVNCALRHYYRGGLWGKLNKDRYR
FSALETTRSFAEFHLLQRLYEAGLPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKETWMQIGRLIR
KLHDLQICHTDLNAHNILLQQTEQGQKCWLLDFDKCGEKSADFWKVQNLNRLKRSFEKEVGRMNIQFTEQNWADLTSAYH
Q

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 28570; Mature: 28570

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQFQQDNQYFIFNFDRTFEQATEFFQAEFWQKQERVIGSAKGRGITYFLQTEDWFGVNC
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
ALRHYYRGGLWGKLNKDRYRFSALETTRSFAEFHLLQRLYEAGLPVPKPIAARIQKGKLG
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCE
ICYQADILTEKIENAQDLTALLQTQTLPKETWMQIGRLIRKLHDLQICHTDLNAHNILLQ
EEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
QTEQGQKCWLLDFDKCGEKSADFWKVQNLNRLKRSFEKEVGRMNIQFTEQNWADLTSAYH
ECCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHC
Q
C
>Mature Secondary Structure
MHQFQQDNQYFIFNFDRTFEQATEFFQAEFWQKQERVIGSAKGRGITYFLQTEDWFGVNC
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
ALRHYYRGGLWGKLNKDRYRFSALETTRSFAEFHLLQRLYEAGLPVPKPIAARIQKGKLG
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCE
ICYQADILTEKIENAQDLTALLQTQTLPKETWMQIGRLIRKLHDLQICHTDLNAHNILLQ
EEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
QTEQGQKCWLLDFDKCGEKSADFWKVQNLNRLKRSFEKEVGRMNIQFTEQNWADLTSAYH
ECCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA