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The map label for this gene is secF

Identifier: 16272199

GI number: 16272199

Start: 267493

End: 268470

Strand: Reverse

Name: secF

Synonym: HI0239

Alternate gene names: 16272199

Gene position: 268470-267493 (Counterclockwise)

Preceding gene: 16272200

Following gene: 16272198

Centisome position: 14.67

GC content: 37.42

Gene sequence:

>978_bases
ATGATGAAACTTTTTACAAAAGATAAAGACGGACATTTTATCCGTGAAATCAATGGGATAAAGCTCCCGTTCCCATTGAC
TGAATTTATGAAAGTGCGTAAATTGGGTTATATATTATCCGCACTTTTGATGGTAATTTCTCTATTTTTTATTATTACCA
AAGGATTTAACTGGGGCTTAGATTTTACTGGTGGAGTGGTATTTGATACTCACTTCTCGCAGTCCGCTAACCTTGAACAA
ATTCGTAGTAAACTTCACGAAAATGGAATTGAAAGCCCAATTGTACAAACCACAGGATCGGTTCAGGATGTGATGATTCG
TTTACCTGCAAGTAATAATGATTCTACCATTGGTGAACACGTCAAAAGTATGCTACAGAATGTAGATAAAGACATTCAAA
TTCGCAGTATTGAGTTCGTTGGCCCAAATGTTGGTGAAGAATTAGCACAAGGTGCGGTATATGCGACTTTAGCGACATTA
GCAATGGTGCTTATTTATGTGGGGTCACGTTTTGAATGGCGTTTAGGCTTTGGCAGTATCGCTTCTCTTGCGCACGACGT
CATTATTACGCTAGGGGTATTCTCTGCATTACAAATTGAAATTGATCTTACTTTTGTCGCAGCGATTTTATCTGTGGTGG
GTTACTCCATCAACGATAGTATTGTGGTATTTGACCGGGTTCGTGAAAATTTCCGAAAAATTAGACGATTGGATACGATT
GATATTATTGATATTTCTTTAACGCAAACTTTATCAAGAACTATCATTACTTCGGTTACTACATTAGTTGTCGTGATGGC
ATTGTTCTTCTTTGGTGGTCCTTCCATTCATAACTTTTCACTTGCTTTACTCGTAGGTATTGGATTTGGTACTTATTCCT
CGATTTTTGTTGCCATTGCCATTGCATACGATGTTGGTTTACGTCGTGAACATATGATCCCACCTAAAGTAGATAAAGAA
ATTGATGAATTACCTTAG

Upstream 100 bases:

>100_bases
GTTGCGATTTCTATGTTTACCGCGATTACAGGAACTCGCGCATTAGTTAATGCCCTTTACGGTGGTAAACAACTTAAAAA
ATTATTAATTTAGGCGGGAA

Downstream 100 bases:

>100_bases
TTAATTTACTTTTAGAATAAATTAAAAAAATAGTTAATCGAAAATTTACGATTAACTATTTTTTATTTATATAAAGCTCT
AATTGAAATAGACTACTTAA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGVVFDTHFSQSANLEQ
IRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDSTIGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATL
AMVLIYVGSRFEWRLGFGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRLDTI
DIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAIAYDVGLRREHMIPPKVDKE
IDELP

Sequences:

>Translated_325_residues
MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGVVFDTHFSQSANLEQ
IRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDSTIGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATL
AMVLIYVGSRFEWRLGFGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRLDTI
DIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAIAYDVGLRREHMIPPKVDKE
IDELP
>Mature_325_residues
MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGVVFDTHFSQSANLEQ
IRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDSTIGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATL
AMVLIYVGSRFEWRLGFGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRLDTI
DIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAIAYDVGLRREHMIPPKVDKE
IDELP

Specific function: Involved in protein export

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily

Homologues:

Organism=Escherichia coli, GI1786610, Length=302, Percent_Identity=47.682119205298, Blast_Score=297, Evalue=6e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECF_HAEIN (P44590)

Other databases:

- EMBL:   L42023
- PIR:   H64056
- RefSeq:   NP_438409.1
- ProteinModelPortal:   P44590
- GeneID:   951151
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0239
- NMPDR:   fig|71421.1.peg.226
- TIGR:   HI_0239
- HOGENOM:   HBG465293
- OMA:   YYENEAR
- ProtClustDB:   PRK13022
- BioCyc:   HINF71421:HI_0239-MONOMER
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665
- PRINTS:   PR01755
- TIGRFAMs:   TIGR00916
- TIGRFAMs:   TIGR00966

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF

EC number: NA

Molecular weight: Translated: 36052; Mature: 36052

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbf102ac)-; HASH(0xc37a02c)-; HASH(0xb2c1d20)-; HASH(0xc6ca3b4)-; HASH(0xbedfd28)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL
CCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDSTIGEH
CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHEEEECCCCCCCCHHHHH
VKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSI
HHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHH
ASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRLDTI
HHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCE
DIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
IAYDVGLRREHMIPPKVDKEIDELP
HHHHHCCCCCCCCCCCCCCHHHCCH
>Mature Secondary Structure
MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL
CCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDSTIGEH
CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHEEEECCCCCCCCHHHHH
VKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSI
HHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHH
ASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRLDTI
HHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCE
DIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
IAYDVGLRREHMIPPKVDKEIDELP
HHHHHCCCCCCCCCCCCCCHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800